Changes
no edit summary
IAEMRKQDLAKDTDPLKLKLLDWIEGKERNIRALLSTLHTVLWDGESRWTPVGMADLVAP
EQVKKHYRRAVLAVHPDKAAGQPYEQHAKMIFMELNDAWSEFENQGSRPLF
=== Available Online Tool Servers ===
# BLASTP: 'NCBI BLASTP', 'EBI SRS BLASTP'
# PSI-BLAST: 'NCBI PSI-BLAST'
# CLUSTALW: 'EBI ClustalW', 'Genebee ClustalW'
# SRS servers: 'NGIC SRS', 'Public SRS servers'
# Search engine: Google (Search online servers by yourself!)
===Available Online Databases ===
# PDB amino-acid FASTA file: NCBI BLAST DB (local: pdbaa.gz)
# PDB: RCSB, 'UK PDB mirror', 'Japan PDB mirror'
===Downloadable programs===
# BLAST: ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/ (local: DOS)
# CLUSTALW: ftp://ftp.ebi.ac.uk/pub/software/dos/clustalw/ (local: DOS[WindowsXP])
# MODELLER: http://salilab.org/modeller/ (local: DOS)
# RasMol: http://www.openrasmol.org/ (local: Windows)
# Perl: http://www.perl.org/ (local: DOS[WindowsXP])
# Other utilities: ALZip.exe (for unzip, untar, and ungzip)
===Solution Example ===
# Found templates (PDB format)
## Sample protein A: [http://biome.ngic.re.kr/ProteinModelling/templates/1QJA.pdb 1QJA.pdb]
## Sample protein B: 1N4C.pdb
--------------------------------------------------------------------------------
Multiple sequence alignments (PIR format)
Sample protein A:KCIP.pir
Sample protein B:GAKH.pir.ORG
--------------------------------------------------------------------------------
MODELLER input files
Sample protein A:ATM, ALI, and TOP files (automatically generated)
Sample protein B:ATM, ALI, and TOP files (manually edited; C-terminal only)
MODELLER output files
Sample protein A:KCIP.pdb
Sample protein B:GAKH.pdb