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Protein modelling

527 bytes added, 09:42, 26 August 2005
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# Found templates (PDB format)
## Sample protein A: [http://biome.ngic.re.kr/ProteinModelling/templates/1QJA.pdb 1QJA.pdb]
## Sample protein B: [http://biome.ngic.re.kr/ProteinModelling/templates/1N4C.pdb 1N4C.pdb ]
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 # Multiple sequence alignments (PIR format)## Sample protein A:[http://biome.ngic.re.kr/ProteinModelling/buildingModels/KCIP/modellerResult/KCIP.pir KCIP.pir] ## Sample protein B:[http://biome.ngic.re.kr/ProteinModelling/buildingModels/GAKH/modellerResult/GAKH.pir.ORG GAKH.pir.ORG ]
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# MODELLER input files
## Sample protein A:
### [http://biome.ngic.re.kr/ProteinModelling/buildingModels/KCIP/modellerResult/1QJA.atm ATM],
### [http://biome.ngic.re.kr/ProteinModelling/buildingModels/KCIP/modellerResult/KCIP.ali ALI],
### [http://biome.ngic.re.kr/ProteinModelling/buildingModels/KCIP/modellerResult/KCIP.top TOP] files (automatically generated)
MODELLER input files
Sample protein A:ATM, ALI, and TOP files (automatically generated)
Sample protein B:ATM, ALI, and TOP files (manually edited; C-terminal only)
MODELLER output files
Sample protein A:KCIP.pdb
Sample protein B:GAKH.pdb
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