Difference between revisions of "PhyloBLAST"
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<font color="#800080" size="4"><strong>PhyloBLAST<br /> | <font color="#800080" size="4"><strong>PhyloBLAST<br /> | ||
</strong></font><br /> | </strong></font><br /> | ||
| − | <strong><font color="# | + | <strong><font color="#0000ff">PhyloBLAST</font></strong> is an internet-accessed application based <sup></sup>on CGI/Perl programming that compares a users protein sequence<sup> </sup>to a SwissProt/TREMBL database using BLAST2 and then allows<sup> </sup>phylogenetic analyses to be performed on selected sequences<sup> </sup>from the BLAST output. <br /> |
| + | <br /> | ||
| + | Flexible features such as ability to<sup> </sup>input your own multiple sequence alignment and use [[PHYLIP]]<sup> </sup>program options provide additional web-based phylogenetic<sup> </sup>analysis functionality beyond the analysis of a BLAST result.<sup> <br /> | ||
</sup><br /> | </sup><br /> | ||
<br /> | <br /> | ||
| + | <strong>See also<br /> | ||
| + | </strong>[[Bioinformatics]]<br /> | ||
| + | [[BLAST]]<br /> | ||
<br /> | <br /> | ||
<font color="#99cc00" size="3"><strong>SITE</strong></font> : <a href="http://www.pathogenomics.bc.ca/phyloBLAST/">http://www.pathogenomics.bc.ca/phyloBLAST/</a><br /> | <font color="#99cc00" size="3"><strong>SITE</strong></font> : <a href="http://www.pathogenomics.bc.ca/phyloBLAST/">http://www.pathogenomics.bc.ca/phyloBLAST/</a><br /> | ||
<font color="#99cc00" size="3"><strong>help</strong></font> : <a href="http://www.pathogenomics.bc.ca/phyloBLAST/phyloBLASThelp.html">http://www.pathogenomics.bc.ca/phyloBLAST/phyloBLASThelp.html</a><br /> | <font color="#99cc00" size="3"><strong>help</strong></font> : <a href="http://www.pathogenomics.bc.ca/phyloBLAST/phyloBLASThelp.html">http://www.pathogenomics.bc.ca/phyloBLAST/phyloBLASThelp.html</a><br /> | ||
<br /> | <br /> | ||
| − | <font color="# | + | <font color="#339966"><strong><font size="3">References</font></strong><br /> |
| − | <strong><font size="2">PhyloBLAST: facilitating phylogenetic analysis of BLAST results.</font></strong><br /> | + | </font><strong><font size="2">1. PhyloBLAST: facilitating phylogenetic analysis of BLAST results. <br /> |
| + | <a href="http://bioinformatics.oxfordjournals.org/cgi/content/abstract/17/4/385">http://bioinformatics.oxfordjournals.org/cgi/content/abstract/17/4/385</a><br /> | ||
| + | 1.1. PhyloBLAST: facilitating phylogenetic analysis of BLAST results.</font></strong><br /> | ||
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=11301315&dopt=Summary">http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=11301315&dopt=Summary</a> | <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=11301315&dopt=Summary">http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=11301315&dopt=Summary</a> | ||
Latest revision as of 14:25, 9 March 2008
PhyloBLAST
PhyloBLAST is an internet-accessed application based on CGI/Perl programming that compares a users protein sequence to a SwissProt/TREMBL database using BLAST2 and then allows phylogenetic analyses to be performed on selected sequences from the BLAST output.
Flexible features such as ability to input your own multiple sequence alignment and use PHYLIP program options provide additional web-based phylogenetic analysis functionality beyond the analysis of a BLAST result.
See also
Bioinformatics
BLAST
SITE : http://www.pathogenomics.bc.ca/phyloBLAST/
help : http://www.pathogenomics.bc.ca/phyloBLAST/phyloBLASThelp.html
References
1. PhyloBLAST: facilitating phylogenetic analysis of BLAST results.
http://bioinformatics.oxfordjournals.org/cgi/content/abstract/17/4/385
1.1. PhyloBLAST: facilitating phylogenetic analysis of BLAST results.
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=11301315&dopt=Summary
