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RNA-Seq

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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span lang="EN-US" style="mso-bidi-font-size: 10.0pt; mso-ascii-font-family: '맑은 고딕'; mso-ascii-theme-font: major-latin; mso-fareast-font-family: '맑은 고딕'; mso-fareast-theme-font: major-latin; mso-hansi-font-family: '맑은 고딕'; mso-hansi-theme-font: major-latin"><font size="2"><font face="맑은 고딕"><font face="Comic Sans MS" size="3">RNA-Seq has several key advantages over previous technologies such as inherent limitation of array-based systems, bypass problems inherent to analog measurement, and high costs.<span style="mso-spacerun: yes">&nbsp; </span>First, RNA-Seq can detect unknown transcripts to correspond to existing genomic sequence.<span style="mso-spacerun: yes">&nbsp; </span>Second, RNA-Seq approach is highly reliable, with relatively little technical variation than the RNA hybridization array approach.<span style="mso-spacerun: yes">&nbsp; </span>Third, RNA-Seq is unlike RNA hybridization array approach, it can enable analyses by the low abundances signal detection, the alternative splice variants, the noncoding RNA profiling, and other novel transcripts.<span style="mso-spacerun: yes">&nbsp; </span>RNA-Seq also indicated highly accurate for quantifying expression levels, as determined using quantitative PCR (qPCR) and spike-in RNA controls of known concentration.<span style="mso-spacerun: yes">&nbsp; </span>Fourth, RNA-Seq is a simpler, less time-consumng, and low cost to analyze by direct ultra high throughput sequencing.</font>&nbsp;<br />
<br />Reference:<span lang="EN-US" style="FONT-SIZE: 8pt; FONT-FAMILY: &quot;맑은 고딕&quot;; mso-ascii-theme-font: major-latin; mso-fareast-theme-font: major-latin; mso-hansi-theme-font: major-latin"><br /></span></font></font></span><span lang="EN-US" style="mso-bidi-font-size: 10.0pt; mso-ascii-font-family: '맑은 고딕'; mso-ascii-theme-font: major-latin; mso-fareast-font-family: '맑은 고딕'; mso-fareast-theme-font: major-latin; mso-hansi-font-family: '맑은 고딕'; mso-hansi-theme-font: major-latin"><font size="2"><font face="맑은 고딕"><span lang="EN-US" style="FONT-SIZE: 8pt; FONT-FAMILY: &quot;맑은 고딕&quot;; mso-ascii-theme-font: major-latin; mso-fareast-theme-font: major-latin; mso-hansi-theme-font: major-latin"><br />&nbsp;&nbsp;&nbsp; Cokus S., Feng, S., Zhange, X., Chen, Z., Merriman, B., Haudenschild, C., Pradhan, S., Nelson, S., Pellegrini, M., and Jacobsen, S. (2008). Shotgun bisulphate sequencing of the&nbsp;&nbsp; </span></font></font></span></p><p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span lang="EN-US" style="mso-bidi-font-size: 10.0pt; mso-ascii-font-family: '맑은 고딕'; mso-ascii-theme-font: major-latin; mso-fareast-font-family: '맑은 고딕'; mso-fareast-theme-font: major-latin; mso-hansi-font-family: '맑은 고딕'; mso-hansi-theme-font: major-latin"><font size="2"><font face="맑은 고딕"><span lang="EN-US" style="FONT-SIZE: 8pt; FONT-FAMILY: &quot;맑은 고딕&quot;; mso-ascii-theme-font: major-latin; mso-fareast-theme-font: major-latin; mso-hansi-theme-font: major-latin">&nbsp;&nbsp;&nbsp;&nbsp;Arabidopsis genme reveals DNA methylation patterning.<span style="mso-spacerun: yes">&nbsp; </span>Nature.<span style="mso-spacerun: yes">&nbsp; </span>452, 215-219.<o:p></o:p></span></font></font></span></p><span lang="EN-US" style="FONT-SIZE: 8pt; FONT-FAMILY: &quot;맑은 고딕&quot;; mso-ascii-theme-font: major-latin; mso-fareast-theme-font: major-latin; mso-hansi-theme-font: major-latin"><p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt 12pt; TEXT-INDENT: -12pt; mso-char-indent-count: -1.5"><span lang="EN-US" style="FONT-SIZE: 8pt; FONT-FAMILY: &quot;맑은 고딕&quot;; mso-ascii-theme-font: major-latin; mso-fareast-theme-font: major-latin; mso-hansi-theme-font: major-latin"><br />Korbel, J., Urban, A., Affourtit, J., Godwin, B., Grubert, F., Simons, J., Kim, P., Palejev, D., Carriero, N., Du, L, et al, (2007).<span style="mso-spacerun: yes">&nbsp; </span>Paired-end maping reveals extensive structural variation in the human genome.<span style="mso-spacerun: yes">&nbsp; </span>Science. 318, 420-426.<o:p></o:p></span></p><p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt 12pt; TEXT-INDENT: -12pt; mso-char-indent-count: -1.5"><span lang="EN-US" style="FONT-SIZE: 8pt; FONT-FAMILY: &quot;맑은 고딕&quot;; mso-ascii-theme-font: major-latin; mso-fareast-theme-font: major-latin; mso-hansi-theme-font: major-latin"><br />Mikkelson, T., Ku,<span style="mso-spacerun: yes">&nbsp; </span>M., Jaffe, D., Issac, B., Lieberman, E., Giannoukos, G., Alvarez, P., Brockman, W., kim, T., Koche, R. et al. (2007).<span style="mso-spacerun: yes">&nbsp; </span>Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.<span style="mso-spacerun: yes">&nbsp; </span>Nature.<span style="mso-spacerun: yes">&nbsp; </span>448. 553-560.<o:p></o:p></span></p><p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt 12pt; TEXT-INDENT: -12pt; mso-char-indent-count: -1.5"><span lang="EN-US" style="FONT-SIZE: 8pt; FONT-FAMILY: &quot;맑은 고딕&quot;; mso-ascii-theme-font: major-latin; mso-fareast-theme-font: major-latin; mso-hansi-theme-font: major-latin"><br />Morin, RD., O&rsquo;Connor MD., Griffith M, Kuchenbauer, F., Delaney, A., Prabhu, AL., Zhao, Y., McDonald, H., Zeng, T., Hirst, M., Eaves, CJ., and Marra MA. (2008). Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells.<span style="mso-spacerun: yes">&nbsp; </span>Genome Research. 18, 610-621.<o:p></o:p></span></p><p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt 12pt; TEXT-INDENT: -12pt; mso-char-indent-count: -1.5"><br />Nagalashmi U., Wang, Z., Shou, C., Raha, D., Gerstein, M., Snyder M. (2008).<span style="mso-spacerun: yes">&nbsp; </span>The transcriptional landscape of the yeast genome difined by RNA sequencing.<span style="mso-spacerun: yes">&nbsp; </span>Science.<span style="mso-spacerun: yes">&nbsp; </span>320, 1344-1349. <o:p></o:p></p><p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt 12pt; TEXT-INDENT: -12pt; mso-char-indent-count: -1.5"><span lang="EN-US" style="FONT-SIZE: 8pt; FONT-FAMILY: &quot;맑은 고딕&quot;; mso-ascii-theme-font: major-latin; mso-fareast-theme-font: major-latin; mso-hansi-theme-font: major-latin"><br />Sultan M., Schulz MH., Richard, H., Magen A., Klingenhoff A., Scherf M., Seifert M., Borodina T., Soldatov, A., Parkhomchuk, D., Schmidt, O&rsquo;Keeffe, S., Haas, S., Vingron M., Lehrach, H., and Yaspo ML. (2008). A Global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science 321, 956 &ndash; 960<br /></span></p></span>
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