<font color="#800080" size="4"><strong>HMMer </strong></font>&rarr; <font size="2"><font color="#ff6600">profile HMMs for protein sequence analysis</font>&nbsp;<br /></font><br />HMMer은 hidden markov models을 적용한 수학적인 방법을 기초로하여 개발된것으로,&nbsp;<br />모든 염기 서열을 인지한 후 multiple alignment를 통해 비교 가능한 염기 서열을 찾아낸다.&nbsp;<br /><br /><br /><font size="2"><font size="3"><strong>관련문서</strong></font> : <a href="http://hmmer.wustl.edu/#overview"><font color="#000000">http://hmmer.wustl.edu/#overview</font></a><br /><br /><br /><strong>관련소프트웨어</strong> : <a href="http://www.clcbio.com/index.php?id=971">http://www.clcbio.com/index.php?id=971</a><a href="http://hmmer.wustl.edu/#overview"><font color="#000000"></font></a><br /><br /><br /><font size="3"><strong>=============================================================================<br />Download</strong></font> : <a href="http://hmmer.wustl.edu/#download"><font color="#000000">http://hmmer.wustl.edu/#download</font></a><br /><dt><strong><br />Source code version </strong></dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz"><font color="#000000">hmmer-2.3.2.tar.gz</font></a> <br /><br /></dd><dt><strong>AMD Opteron/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz</font></a><br /><font size="-1">Opteron 242, 2x1.6 GHz; SUSE Linux; GCC 3.3.3; --enable-threads --enable-lfs <br />[Contributed by Martin Gollery, University of Nevada, Reno.]<br />RPMs built with the <a href="http://www.pgroup.com/"><font color="#000000">Portland Group</font></a> C compiler are also available from Joe Landman and <a href="http://www.scalableinformatics.com/"><font color="#000000">Scalable Informatics, LLC</font></a>:<br />you can download <a href="http://downloads.scalableinformatics.com/downloads/hmmer/hmmer-2.3.2-5pgi.x86_64_pgi.rpm"><font color="#000000">hmmer-2.3.2-5pgi.x86_64_pgi.rpm</font></a> from their site. </font><br /><br /></dd><dt><strong>Apple Macintosh PowerPC OS/X</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz"><font color="#000000">hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz</font></a> <br /><font size="-1">Apple PowerPC; 2x G4/1.25Ghz; OS/X Darwin 6.8; --enable-threads --enable-lfs --enable-altivec; CFLAGS=&quot;-O&quot; <br />Includes Altivec optimizations contributed by Erik Lindahl, Stanford University. </font><br /><br /></dd><dt><strong>Compaq Alpha Tru64</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-tru64.tar.gz"><font color="#000000">hmmer-2.3.2.bin.alpha-tru64.tar.gz</font></a><br /><font size="-1">Compaq Alpha ES40; Tru64 5.1B; --enable-threads --enable-lfs; CC=cc CFLAGS=-O </font><br /><br /></dd><dt><strong>Compaq Alpha Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.alpha-linux.tar.gz</font></a><br /><font size="-1">Compaq Alpha ES40; Red Hat Alpha Linux 7.1; --enable-threads --enable-lfs; CFLAGS=-O </font>

</dd><dt><strong>Hewlett/Packard IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-hp-linux.tar.gz</font></a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; Linux 2.4.18-e.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), HP/UX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz</font></a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; HP/UX 11.22; --enable-threads --enable-lfs; CC=cc CFLAGS=&quot;-O&quot; </font>

</dd><dt><strong>IBM Power4, Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz</font></a> <br /><font size="-1">IBM pSeries; Power4; SusE Linux 8 (SLES8); --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O -q64 -qtune=pwr4 -qcache=auto&quot;<br />[Provided by Bob Arenburg and IBM Life Sciences.] </font>

</dd><dt><strong>IBM Power4, AIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-aix.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ibm-aix.tar.gz</font></a> <br /><font size="-1">IBM pSeries 630; 4xPower4/1.2GHz; AIX 5.2; --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O2&quot;<br />On large multiprocessor systems (8 cpus or more), you want to add &quot;-bmaxdata:0x80000000&quot; to CFLAGS and recompile to enable AIX's &quot;Large Program Support&quot;; otherwise, AIX only allows a program to allocate 256 MB of RAM by default. </font><br /><br /></dd><dt><strong>Intel FreeBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-freebsd.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-freebsd.tar.gz</font></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; FreeBSD 4.7; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel GNU/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-linux.tar.gz</font></a> <br />Or, as an RPM: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2-1static_pvm.i686.rpm"><font color="#000000">hmmer-2.3.2-1static_pvm.i686.rpm</font></a><br /><font size="-1">Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2; --enable-threads --enable-lfs --enable-pvm; CC=icc CFLAGS=&quot;-O3 -axMKW -static&quot; <br />the RPM spec file is available: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-pvm.spec"><font color="#000000">hmmer-pvm.spec</font></a> </font><br /><br /></dd><dt><strong>Intel OpenBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-openbsd.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-openbsd.tar.gz</font></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; OpenBSD 3.2; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel Solaris</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-solaris.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-solaris.tar.gz</font></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; x86 Solaris 9; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz</font></a> <br /><font size="-1">Silicon Graphics Altix 3000; 16xItanium2/900/1.5; Linux 2.4.19; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics MIPS IRIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.sgi-irix64.tar.gz"><font color="#000000">hmmer-2.3.2.bin.sgi-irix64.tar.gz</font></a> <br /><font size="-1">Silicon Graphics Origin200; 4xMIPS R10K/180,195/2; IRIX 6.5.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Sun Sparc Solaris</strong> </dt><dd>[The Solaris box in our compile farm has recently decided to quit, after years of faithful service. For now, build from the <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz"><font color="#000000">source release</font></a> instead. We have one report that 2.3.2 does not compile cleanly on Solaris 8: you may need to manually add -lnsl to LIBS in src/Makefile, after running ./configure. We will resolve this in a subsequent release, as soon as we have access to Solaris again.]&nbsp;<br /><strong><font size="3">=============================================================================</font></strong><br /><!-- Saved in parser cache with key Biopedia:pcache:idhash:8269-0!1!0!0!!ko!2 and timestamp 20060607120252 -->