Difference between revisions of "KPGP 00139"

From Opengenome.net
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<ul>
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<h3>Foreigner Genome Data</h3>
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    <li><span style="font-size: small"><span style="font-family: Arial"><strong>Public Profile ID :&nbsp; KPGP_00139 <br />
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<ul class="genome_list_title">
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    </strong></span></span></li>
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     <li>Genome data of Koreans and other ethnicities is used to be comparative data for finding the Korean unique genetic information.</li>
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    <li><span style="font-size: small"><span style="font-family: Arial"><strong>Gender :&nbsp; F <br />
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     <li>The KPGP data can be downloaded from the <a href="ftp://biodisk.org/Release/KPGP/KPGP_Data_2017_Release_Candidate/">FTP</a> site.</li>
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     </strong></span></span></li>
 
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     <li><span style="font-size: small"><span style="font-family: Arial"><strong>Nationality :&nbsp; Korea <br />
 
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    </strong></span></span></li>
 
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    <li><span style="font-size: small"><span style="font-family: Arial"><strong>Ethnic Group :&nbsp; East Asian <br />
 
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    </strong></span></span></li>
 
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    <li><span style="font-size: small"><span style="font-family: Arial"><strong>Platform :&nbsp; Illumina,HiSeq2000</strong></span></span></li>
 
 
</ul>
 
</ul>
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<p>&nbsp;
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<p>&nbsp;</p>
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<table border="0" cellspacing="1" cellpadding="1" width="100%">
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<table style="height: 37px; width: 645px" cellspacing="1" cellpadding="1" width="645" border="1">
 
     <tbody>
 
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             <td style="text-align: center" bgcolor="#ff0000" width="50%"><b><span style="color: #ffffff"><span style="font-size: large"><span style="font-family: Arial">BioFTP Download</span></span></span></b></td>
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             <td style="text-align: center">No</td>
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             <td style="text-align: center" bgcolor="#006600" colspan="4"><span style="color: #ffffff"><span style="font-size: large"><b>Torrent Download</b></span></span></td>
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            <td style="text-align: center">Public ID</td>
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            <td style="text-align: center">Ethnic Group</td>
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            <td style="text-align: center">Gender</td>
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            <td style="text-align: center">Nationality</td>
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             <td style="text-align: center">WGS</td>
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            <td style="text-align: center">WES</td>
 
         </tr>
 
         </tr>
 
         <tr>
 
         <tr>
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             <td>
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             <td style="text-align: center">1</td>
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            <p><span style="font-size: large"><span style="font-family: Arial"><strong>Genetic data Download</strong></span></span><span style="font-size: small"><span style="font-family: Arial"><strong><br />
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             <td style="text-align: center">KPGP-00010</td>
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             </strong></span></span></p>
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            <td style="text-align: center">Caucasian</td>
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            <ul>
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            <td style="text-align: center">F</td>
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                <li><span style="font-size: small"><span style="font-family: Arial"><strong>Raw Data</strong> <a target="_blank" href="http://opengenome.net/index.php/KPGP_00139_KT">Raw Data</a><br />
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             <td style="text-align: center">USA</td>
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                </span></span></li>
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             <td style="text-align: center">O</td>
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                <li><span style="font-size: small"><span style="font-family: Arial"><strong>Aligned Data</strong> <a href="ftp://kpgp:qwerzxcv@bioftp.org/BiO/Distribute/Open-KPGP/TGP2011D0010/MAPPING_RESULT/KPGP139_G_110915_HiSeq_EastAsian_Kor_F.merge.bam">Mapping</a> / <a href="ftp://kpgp:qwerzxcv@bioftp.org/BiO/Distribute/Open-KPGP/TGP2011D0010/MAPPING_RESULT/KPGP139_G_110915_HiSeq_EastAsian_Kor_F.merge.bam.bai">Mapping Index</a><br />
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             <td style="text-align: center">&nbsp;</td>
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                </span></span></li>
 
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                <li><span style="font-size: small"><span style="font-family: Arial"><strong>Nonsynonymous SNVs</strong> <a href="ftp://kpgp:qwerzxcv@bioftp.org/BiO/Distribute/Open-KPGP/TGP2011D0010/NS_SNV/KPGP139_G_110915_HiSeq_EastAsian_Kor_F.NSSNV.gz">Nonsynonymous SNVs</a><br />
 
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                </span></span></li>
 
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                <li><span style="font-size: small"><span style="font-family: Arial"><strong>Read me</strong> <a target="_blank" href="ftp://kpgp:qwerzxcv@bioftp.org/BiO/Distribute/Open-KPGP/TGP2011D0010/README/KPGP_139.readme.txt">Read me</a><br />
 
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                </span></span></li>
 
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                <li><span style="font-size: small"><span style="font-family: Arial"><strong>Genome Variation</strong> <a href="ftp://kpgp:qwerzxcv@bioftp.org/BiO/Distribute/Open-KPGP/TGP2011D0010/SNV/KPGP139_G_110915_HiSeq_EastAsian_Kor_F.vcf.SNV.gz">SNVs</a> <a href="nofile">CNVs</a> <a href="ftp://kpgp:qwerzxcv@bioftp.org/BiO/Distribute/Open-KPGP/TGP2011D0010/INDEL/KPGP139_G_110915_HiSeq_EastAsian_Kor_F.vcf.INDEL.gz">INDELs</a> <a href="ftp://kpgp:qwerzxcv@bioftp.org/BiO/Distribute/Open-KPGP/TGP2011D0010/SV/KPGP139_G_110915_HiSeq_EastAsian_Kor_F.sv.gz">SVs</a>&nbsp;</span></span></li>
 
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            </ul>
 
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            <p>&nbsp;</p>
 
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            </td>
 
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             <td colspan="3">
 
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            <ul>
 
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                <li style="text-align: center"><span style="font-size: large"><span style="font-family: Arial"><strong><span style="color: #000000"><a href="ftp://kpgp:qwerzxcv@bioftp.org/BiO/Distribute/Open-KPGP_Torrent/TGP2011D0010.torrent">Torrent Download</a></span></strong></span></span></li>
 
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            </ul>
 
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            </td>
 
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        </tr>
 
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    </tbody>
 
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</table>
 
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</p>
 
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<p><br />
 
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&nbsp;
 
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<table border="1" cellspacing="1" cellpadding="1" width="100%" align="center">
 
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    <tbody>
 
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        <tr>
 
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             <td style="text-align: center" bgcolor="#3366cc"><span style="color: #ffffff"><span style="font-size: large"><b>Clinic Survey </b></span></span></td>
 
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             <td style="text-align: center" bgcolor="#ff33cc"><span style="color: #ffffff"><span style="font-size: large"><b>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Trait Survey </b></span></span></td>
 
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        </tr>
 
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        <tr>
 
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            <td>physical examination</td>
 
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            <td>Physical Characteristics</td>
 
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        </tr>
 
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        <tr>
 
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            <td>electrocardiography</td>
 
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            <td>Eating Habits</td>
 
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        </tr>
 
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        <tr>
 
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            <td>pulmonary function test</td>
 
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            <td>Tooth</td>
 
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        </tr>
 
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        <tr>
 
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            <td>fundus .intraocular pressure</td>
 
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            <td>Hair</td>
 
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        </tr>
 
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        <tr>
 
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            <td>Bio-Age test</td>
 
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            <td>Sleeping</td>
 
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        </tr>
 
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        <tr>
 
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            <td>bone densitometry</td>
 
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            <td>Skin</td>
 
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        </tr>
 
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        <tr>
 
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            <td>gynecology</td>
 
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            <td>Allergies</td>
 
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        </tr>
 
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        <tr>
 
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            <td>breast cancer test</td>
 
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            <td>Women's Health</td>
 
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        </tr>
 
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        <tr>
 
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            <td>body composition test</td>
 
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            <td>Disease</td>
 
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        </tr>
 
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        <tr>
 
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            <td>general examination of urine</td>
 
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            <td>Family Disease History</td>
 
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        </tr>
 
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        <tr>
 
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            <td>complete blood cell count</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>liver function test</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>renal function test</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>the functional test of heart and lipid test</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>diabetes mellitus test</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>iron deficiency anemia</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>exocrine pancreatic function test</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>myocardial infarction</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>inflammatory disease</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>tests for allergic diseases</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>Electrolyte</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>thyroid function test</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>tumor marker test</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>Skeletal diseases</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>tests for hepatitis</td>
 
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            <td>&nbsp;</td>
 
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        </tr>
 
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        <tr>
 
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            <td>Endocrine Function Test</td>
 
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            <td>&nbsp;</td>
 
 
         </tr>
 
         </tr>
 
         <tr>
 
         <tr>
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             <td>infection</td>
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             <td style="text-align: center">2</td>
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             <td>&nbsp;</td>
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             <td style="text-align: center">KPGP-00349</td>
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            <td style="text-align: center">Central Asian</td>
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            <td style="text-align: center">F</td>
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            <td style="text-align: center">Kazakhstan</td>
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            <td style="text-align: center">O</td>
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            <td style="text-align: center">&nbsp;</td>
 
         </tr>
 
         </tr>
 
     </tbody>
 
     </tbody>
 
</table>
 
</table>
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</p>
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<p>&nbsp;</p>
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<p><span style="color: #ff0000"><span style="font-size: x-large"><b><a href="/userfiles/Research Surveys_LIST_clinic.xls">Click here to Download</a></b></span></span></p>
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<div id="bottom"><dl><dt>Data Usage </dt><dd>&nbsp; </dd><dd>1. The genome data&nbsp;is provided by Genome Research Foundation. Anyone can use the data freely. </dd><dd>2. People who would like to acquire further information about the data for research publication and collaboration, please contact us. </dd><dt>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Contact: <a href="mailto:info@pgi.re.kr">info@pgi.re.kr</a> / 82-43-235-8687</dt></dl></div>
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<p>&nbsp;</p>

Revision as of 10:46, 22 June 2012

Foreigner Genome Data

  • Genome data of Koreans and other ethnicities is used to be comparative data for finding the Korean unique genetic information.
  • The KPGP data can be downloaded from the FTP site.

 

No Public ID Ethnic Group Gender Nationality WGS WES
1 KPGP-00010 Caucasian F USA O  
2 KPGP-00349 Central Asian F Kazakhstan O  

 

Data Usage
 
1. The genome data is provided by Genome Research Foundation. Anyone can use the data freely.
2. People who would like to acquire further information about the data for research publication and collaboration, please contact us.
            Contact: info@pgi.re.kr / 82-43-235-8687

 

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