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[[L-Breeder]]: Allows you to display and breed L-system forms <br />
[[act]]: A DNA sequence comparison viewer based on Artemis <br />
[[ariadne]]: Programs to compare protein sequences and profiles <br />
[[artemis]]: A DNA sequence viewer and annotation tool <br />
[[avida]]: Avida is an auto-adaptive genetic system designed for ALife research <br />
[[babel]]: Converts among various molecular file formats <br />
[[biojava]]: Open-source java tools for processing biological data <br />
[[bioperl]]: openfree Biological perl module.<br />
[[chemeq]]: Outputs LaTeX code for chemical reaction <br />
[[clustalw]]: CLUSTAL W Multiple Sequence Alignment Program <br />
[[mrbayes]]: Bayesian inference of phylogeny <br />
[[coalesce]]: A program to fit population models <br />
[[crimap]]: Creation of multilocus linkage maps <br />
[[deft]]: Density functional molecular orbital calculation <br />
[[distribfold]]: distributedfolding.org distributed protein folding project <br />
[[dna-qc]]: A quality control algorithm for DNA sequencing projects <br />
[[emboss]]: A collection of open source tools for genetic sequence analysis <br />
[[fasta]]: A collection of programs for searching DNA and protein databases <br />
[[fasta3]]: A collection of programs for searching DNA and protein databases <br />
[[fastdnaml]]: Faster DNAML, makes phylogenetic trees using maximum likelihood <br />
[[flip]]: Flip is used to find/translate orfs <br />
[[fluctuate]]: A program to fit population models <br />
[[garlic]]: Molecular viewer, editor and visualization program <br />
[[genpak]]: A set of small utilities to manipulate DNA sequences <br />
[[gff2ps]]: Converts gff-formated genomic data-sets to PostScript <br />
[[gperiodic]]: Displays a periodic table of the elements <br />
[[grappa]]: Genome Rearrangements Analysis and Phylogeny Software <br />
[[hmmer]]: Profile hidden Markov models for biological sequence analysis <br />
[[kinemage]]: A molecular visualization program with special functions <br />
[[lamarc]]: A package of programs for computing population parameters <br />
[[linux-foldingathome]]: Distributed client for Protein Folding <br />
[[libgenome]]: Toolkit for developing bioinformatic related software in C++ <br />
[[lsysexp]]: A GTK based program for viewing and creating L-system fractals <br />
[[migrate]]: A program to estimate population sizes and migration rates <br />
[[molden]]: Display molecular orbitals and electron densities in 2D and 3D <br />
[[mopac]]: Semi-empirical (MNDO, etc.) molecular orbital calculation <br />
[[nab]]: A language for macromolecules <br />
[[ncbi-toolkit]]: NCBI development toolkit, including BLAST 2 and GenBank/Entrez support <br />
[[nclever]]: NClever is a character-based version of NCBI's Entrez program <br />
[[ortep3]]: The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure <br />
[[p5-AcePerl]]: Perl5 interface to the ACEDB genome database system <br />
[[p5-bioperl]]: A collection of Perl modules for bioinformatics <br />
[[paml]]: Phylogenetic Analysis by Maximum Likelihood (PAML) <br />
[[phylip]]: A Phylogeny Inference Package <br />
[[platon]]: Tool for viewing molecular/crystallographic structures <br />
[[povchem]]: Simple yet powerful tool to generate POV from a PDB file <br />
[[primer3]]: Primer3 helps to choose primers for PCR reactions <br />
[[psi88]]: Plotting wavefunctions (molecular orbitals) in 3D <br />
[[py-biopython]]: A collection of Python modules for bioinformatics <br />
[[pymol]]: Free and Open-Source molecular modeling system <br />
[[rasmol]]: Fast Molecular Visualization Program <br />
[[recombine]]: A program to fit population models across sites <br />
[[ruby-bio]]: Integrated environment for Bioinformatics written in Ruby <br />
[[seaview]]: Multiple DNA/protein sequence alignment editor <br />
[[seqio]]: A set of C functions which can read/write biological sequence files <br />
[[sim4]]: An algorithm for aligning expressed DNA with genomic sequences <br />
[[spdbv]]: Deep View Swiss-PdbViewer is a Protein viewer and analysis tool <br />
[[tRNAscan-SE]]: An improved tool for transfer RNA detection <br />
[[t_coffee]]: A multiple DNA or protein sequence alignment package <br />
[[tinker]]: A general purpose molecular modelling package <br />
[[treepuzzle]]: Maximum likelihood phylogeny reconstruction using quartets <br />
[[treeviewx]]: A phylogenetic tree viewer <br />
[[wise]]: Intelligent algorithms for DNA searches <br />
[[xdrawchem]]: Chemical drawing program <br />
[[xmolwt]]: Calculate formula weight and percent of each element for a given formula <br />
[[blast]]: WU BLAST, a software package for sequence similarity searches <br />
[[embassy]]: A collection of contributed EMBOSS applications <br />
[[p5-Bio-ASN1-EntrezGene]]: Regular expression-based Perl Parser for NCBI Entrez Gene <br />
[[p5-Bio-Das]]: Client-side library for Distributed Genome Annotation System <br />
[[adun]]: Molecular Simulator for GNUstep <br />
[[belvu]]: A viewer for multiple sequence alignments <br />
[[biococoa]]: Bioinformatics framework <br />
[[blat]]: A fast tool for local sequence similarity searches <br />
[[boinc-simap]]: Similarity Matrix of Proteins project for BOINC <br />
[[dotter]]: A viewer for multiple sequence alignments <br />
[[gmap]]: A Genomic Mapping and Alignment Program for mRNA and EST Sequences <br />
[[jalview]]: A viewer and editor for multiple sequence alignments <br />
[[lagan]]: Efficient tools for large-scale multiple alignments of genomic DNA <br />
[[mafft]]: Multiple sequence alignments based on fast Fourier transform <br />
[[p5-Bio-Phylo]]: Phylogenetic analysis using perl <br />
[[p5-bioperl-devel]]: A collection of Perl modules for bioinformatics (developer release) <br />
[[p5-bioperl-run]]: Wrapper modules for common bioinformatics tools <br />
[[p5-bioperl-run-devel]]: Wrapper modules for common bioinformatics tools (developer release) <br />
[[protomol]]: OO, component based, framework for molecular dynamics (MD) simulations <br />
[[mummer]]: A modular system for rapid whole genome alignment <br />
[[act]]: A DNA sequence comparison viewer based on Artemis <br />
[[ariadne]]: Programs to compare protein sequences and profiles <br />
[[artemis]]: A DNA sequence viewer and annotation tool <br />
[[avida]]: Avida is an auto-adaptive genetic system designed for ALife research <br />
[[babel]]: Converts among various molecular file formats <br />
[[biojava]]: Open-source java tools for processing biological data <br />
[[bioperl]]: openfree Biological perl module.<br />
[[chemeq]]: Outputs LaTeX code for chemical reaction <br />
[[clustalw]]: CLUSTAL W Multiple Sequence Alignment Program <br />
[[mrbayes]]: Bayesian inference of phylogeny <br />
[[coalesce]]: A program to fit population models <br />
[[crimap]]: Creation of multilocus linkage maps <br />
[[deft]]: Density functional molecular orbital calculation <br />
[[distribfold]]: distributedfolding.org distributed protein folding project <br />
[[dna-qc]]: A quality control algorithm for DNA sequencing projects <br />
[[emboss]]: A collection of open source tools for genetic sequence analysis <br />
[[fasta]]: A collection of programs for searching DNA and protein databases <br />
[[fasta3]]: A collection of programs for searching DNA and protein databases <br />
[[fastdnaml]]: Faster DNAML, makes phylogenetic trees using maximum likelihood <br />
[[flip]]: Flip is used to find/translate orfs <br />
[[fluctuate]]: A program to fit population models <br />
[[garlic]]: Molecular viewer, editor and visualization program <br />
[[genpak]]: A set of small utilities to manipulate DNA sequences <br />
[[gff2ps]]: Converts gff-formated genomic data-sets to PostScript <br />
[[gperiodic]]: Displays a periodic table of the elements <br />
[[grappa]]: Genome Rearrangements Analysis and Phylogeny Software <br />
[[hmmer]]: Profile hidden Markov models for biological sequence analysis <br />
[[kinemage]]: A molecular visualization program with special functions <br />
[[lamarc]]: A package of programs for computing population parameters <br />
[[linux-foldingathome]]: Distributed client for Protein Folding <br />
[[libgenome]]: Toolkit for developing bioinformatic related software in C++ <br />
[[lsysexp]]: A GTK based program for viewing and creating L-system fractals <br />
[[migrate]]: A program to estimate population sizes and migration rates <br />
[[molden]]: Display molecular orbitals and electron densities in 2D and 3D <br />
[[mopac]]: Semi-empirical (MNDO, etc.) molecular orbital calculation <br />
[[nab]]: A language for macromolecules <br />
[[ncbi-toolkit]]: NCBI development toolkit, including BLAST 2 and GenBank/Entrez support <br />
[[nclever]]: NClever is a character-based version of NCBI's Entrez program <br />
[[ortep3]]: The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure <br />
[[p5-AcePerl]]: Perl5 interface to the ACEDB genome database system <br />
[[p5-bioperl]]: A collection of Perl modules for bioinformatics <br />
[[paml]]: Phylogenetic Analysis by Maximum Likelihood (PAML) <br />
[[phylip]]: A Phylogeny Inference Package <br />
[[platon]]: Tool for viewing molecular/crystallographic structures <br />
[[povchem]]: Simple yet powerful tool to generate POV from a PDB file <br />
[[primer3]]: Primer3 helps to choose primers for PCR reactions <br />
[[psi88]]: Plotting wavefunctions (molecular orbitals) in 3D <br />
[[py-biopython]]: A collection of Python modules for bioinformatics <br />
[[pymol]]: Free and Open-Source molecular modeling system <br />
[[rasmol]]: Fast Molecular Visualization Program <br />
[[recombine]]: A program to fit population models across sites <br />
[[ruby-bio]]: Integrated environment for Bioinformatics written in Ruby <br />
[[seaview]]: Multiple DNA/protein sequence alignment editor <br />
[[seqio]]: A set of C functions which can read/write biological sequence files <br />
[[sim4]]: An algorithm for aligning expressed DNA with genomic sequences <br />
[[spdbv]]: Deep View Swiss-PdbViewer is a Protein viewer and analysis tool <br />
[[tRNAscan-SE]]: An improved tool for transfer RNA detection <br />
[[t_coffee]]: A multiple DNA or protein sequence alignment package <br />
[[tinker]]: A general purpose molecular modelling package <br />
[[treepuzzle]]: Maximum likelihood phylogeny reconstruction using quartets <br />
[[treeviewx]]: A phylogenetic tree viewer <br />
[[wise]]: Intelligent algorithms for DNA searches <br />
[[xdrawchem]]: Chemical drawing program <br />
[[xmolwt]]: Calculate formula weight and percent of each element for a given formula <br />
[[blast]]: WU BLAST, a software package for sequence similarity searches <br />
[[embassy]]: A collection of contributed EMBOSS applications <br />
[[p5-Bio-ASN1-EntrezGene]]: Regular expression-based Perl Parser for NCBI Entrez Gene <br />
[[p5-Bio-Das]]: Client-side library for Distributed Genome Annotation System <br />
[[adun]]: Molecular Simulator for GNUstep <br />
[[belvu]]: A viewer for multiple sequence alignments <br />
[[biococoa]]: Bioinformatics framework <br />
[[blat]]: A fast tool for local sequence similarity searches <br />
[[boinc-simap]]: Similarity Matrix of Proteins project for BOINC <br />
[[dotter]]: A viewer for multiple sequence alignments <br />
[[gmap]]: A Genomic Mapping and Alignment Program for mRNA and EST Sequences <br />
[[jalview]]: A viewer and editor for multiple sequence alignments <br />
[[lagan]]: Efficient tools for large-scale multiple alignments of genomic DNA <br />
[[mafft]]: Multiple sequence alignments based on fast Fourier transform <br />
[[p5-Bio-Phylo]]: Phylogenetic analysis using perl <br />
[[p5-bioperl-devel]]: A collection of Perl modules for bioinformatics (developer release) <br />
[[p5-bioperl-run]]: Wrapper modules for common bioinformatics tools <br />
[[p5-bioperl-run-devel]]: Wrapper modules for common bioinformatics tools (developer release) <br />
[[protomol]]: OO, component based, framework for molecular dynamics (MD) simulations <br />
[[mummer]]: A modular system for rapid whole genome alignment <br />