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<p><strong>PDBWiki</strong> is a prototype for a community annotated knowledge base of biological molecular structures and related information. It was created in August 2007 by members of the <a rel="nofollow" title="http://www.molgen.mpg.de/~lappe/" class="external text" href="http://www.molgen.mpg.de/%7Elappe/">Structural Proteomics Group</a> at the <a rel="nofollow" title="http://www.molgen.mpg.de/" class="external text" href="http://www.molgen.mpg.de/">Max-Planck-Institute for Molecular Genetics</a> and is currently under development. <a title="Feedback and suggestions" href="http://pdbwiki.org/index.php/Feedback_and_suggestions">Feedback and suggestions</a> are very welcome. </p>
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<a name="Project_purpose"></a>
<h2><span class="editsection"></span><span class="mw-headline">Project purpose</span></h2>
<p>The purpose of the project is to create a community driven resource for basic protein structure annotation. Starting with data from the <a title="Protein Data Bank" href="http://pdbwiki.org/index.php/Protein_Data_Bank">Protein Data Bank</a> (PDB), we allow users to contribute comments, classification, and other information to the archive. By this mechanism we aim to create a forum for discussion, improve data quality and minimize duplication of effort. </p>
<p>Our hope is that community driven feedback can produce a high standard of quality feedback leading to standardised datasets for protein structure analysis. Ultimately we aim to provide a hub for information related to the PDB, highlighting the diverse range of decentralised data related to protein structure. </p>
<a name="Future_development"></a>
<h2><span class="editsection"></span><span class="mw-headline">Future development</span></h2>
<p>Features which may be incorporated in the future include </p>
<ul>
<li> Information about non-polymeric structural entities (ligands, metal ions, etc.) </li>
<li> More external annotations (<a title="SCOP" href="http://pdbwiki.org/index.php/SCOP">SCOP</a>, <a title="Bind" class="new" href="http://pdbwiki.org/index.php?title=Bind&action=edit">Bind</a>, <a title="Kegg" class="new" href="http://pdbwiki.org/index.php?title=Kegg&action=edit">Kegg</a>, <a title="Pfam" class="new" href="http://pdbwiki.org/index.php?title=Pfam&action=edit">Pfam</a>, etc.) </li>
<li> Facilities to upload and share user contributed sets of proteins </li>
<li> Threaded discussions </li>
</ul>
<a name="References"></a>
<h2><span class="editsection"></span><span class="mw-headline">References</span></h2>
<ul>
<li> J. Giles: Key biology databases go wiki. Nature 445, 691 - 691 (2007) </li>
<li> J.D. Osborne, S. Lin, W.A. Kibbe: Other riffs on cooperation are already showing how well a wiki could work. Nature 446, 856 - 856 (2007) </li>
<li> K. Wang: Gene-function wiki would let biologists pool worldwide resources. Nature 439, 534 (2006). </li>
<li> K. Yager: Wiki ware could harness the Internet for science. Nature 440, 278 (2006). </li>
<li> S. Gong, T. Kim, J. Oh, J. Kwon, S. Cho, D. Bolser & J. Bhak, BioCC: An Openfree Hypertext Bio Community Cluster for Biology. Genomics & Informatics, 4(3) 125 - 128, (2006) </li>
</ul>
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<h2><span class="editsection"></span><span class="mw-headline">Similar projects</span></h2>
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<table summary="Contents" class="toc" id="toc">
<tbody>
<tr>
<td><br />
</td>
</tr>
</tbody>
</table>
<script type="text/javascript"> if (window.showTocToggle) { var tocShowText = "show"; var tocHideText = "hide"; showTocToggle(); } </script>
<a name="Project_purpose"></a>
<h2><span class="editsection"></span><span class="mw-headline">Project purpose</span></h2>
<p>The purpose of the project is to create a community driven resource for basic protein structure annotation. Starting with data from the <a title="Protein Data Bank" href="http://pdbwiki.org/index.php/Protein_Data_Bank">Protein Data Bank</a> (PDB), we allow users to contribute comments, classification, and other information to the archive. By this mechanism we aim to create a forum for discussion, improve data quality and minimize duplication of effort. </p>
<p>Our hope is that community driven feedback can produce a high standard of quality feedback leading to standardised datasets for protein structure analysis. Ultimately we aim to provide a hub for information related to the PDB, highlighting the diverse range of decentralised data related to protein structure. </p>
<a name="Future_development"></a>
<h2><span class="editsection"></span><span class="mw-headline">Future development</span></h2>
<p>Features which may be incorporated in the future include </p>
<ul>
<li> Information about non-polymeric structural entities (ligands, metal ions, etc.) </li>
<li> More external annotations (<a title="SCOP" href="http://pdbwiki.org/index.php/SCOP">SCOP</a>, <a title="Bind" class="new" href="http://pdbwiki.org/index.php?title=Bind&action=edit">Bind</a>, <a title="Kegg" class="new" href="http://pdbwiki.org/index.php?title=Kegg&action=edit">Kegg</a>, <a title="Pfam" class="new" href="http://pdbwiki.org/index.php?title=Pfam&action=edit">Pfam</a>, etc.) </li>
<li> Facilities to upload and share user contributed sets of proteins </li>
<li> Threaded discussions </li>
</ul>
<a name="References"></a>
<h2><span class="editsection"></span><span class="mw-headline">References</span></h2>
<ul>
<li> J. Giles: Key biology databases go wiki. Nature 445, 691 - 691 (2007) </li>
<li> J.D. Osborne, S. Lin, W.A. Kibbe: Other riffs on cooperation are already showing how well a wiki could work. Nature 446, 856 - 856 (2007) </li>
<li> K. Wang: Gene-function wiki would let biologists pool worldwide resources. Nature 439, 534 (2006). </li>
<li> K. Yager: Wiki ware could harness the Internet for science. Nature 440, 278 (2006). </li>
<li> S. Gong, T. Kim, J. Oh, J. Kwon, S. Cho, D. Bolser & J. Bhak, BioCC: An Openfree Hypertext Bio Community Cluster for Biology. Genomics & Informatics, 4(3) 125 - 128, (2006) </li>
</ul>
<p><br />
</p>
<a name="Similar_projects"></a>
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<li> <a rel="nofollow" title="http://www.humanproteinpedia.org/" class="external free" href="http://www.humanproteinpedia.org/">http://www.humanproteinpedia.org/</a> </li>
<li> <a rel="nofollow" title="http://www.proteopedia.org/" class="external free" href="http://www.proteopedia.org/">http://www.proteopedia.org/</a> </li>
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<li> <a rel="nofollow" title="http://thebiologistonline.com" class="external free" href="http://thebiologistonline.com/">http://thebiologistonline.com</a> </li>
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