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<strong><em>No7. 8. Preparation of stock solution<br />
<br />
</em></strong>
<table style="WIDTH: 790px; HEIGHT: 959px" cellspacing="1" cellpadding="1" width="790" summary="" border="1">
<tbody>
<tr>
<td bgcolor="#0066ff"> <strong><font color="#ffff99" size="2">Solution</font></strong></td>
<td bgcolor="#0066ff"><strong><font color="#ffff99" size="2"> Method of preparation</font></strong></td>
<td bgcolor="#0066ff"><strong><font color="#ffff99" size="2"> Comments</font></strong></td>
</tr>
<tr>
<td bgcolor="#cccccc"><font size="2"> <strong>Phosphate-buffered saline (PBS)</strong></font></td>
<td bgcolor="#cccccc"><font size="2"> Dissolve 8.0g NaCl, 0.2g of KCl, 1.44g of Na2HPO4, and 0.24g of KH2PO4 in 800ml of distilled H2O. <br />
Adjust the pH to 7.4. <br />
Adjust the volume to 1L. <br />
Dispense in convenient volumes and sterilize by autoclaving. <br />
Store at room temperature. </font></td>
<td bgcolor="#cccccc"><font size="2"> Can be made as a 10X stock.</font></td>
</tr>
<tr>
<td><strong><font size="2"> Tris-buffered saline (TBS) (25mM Tris)</font></strong></td>
<td><font size="2"> Dissolve 8.0g of NaCl, 0.2g of KCl, and 3g of Tris base in 800ml of distilled H2O. <br />
Adjust the pH to 8.0 with 1M HCl. <br />
Adjust the volume to 1 liter.<br />
Dispense in convenient volumes and sterilize by autoclaving. <br />
Store at room temperature. </font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><font size="2"> <strong>10% Sodium azide</strong></font></td>
<td bgcolor="#cccccc"><font size="2"> Dissolve 10g of sodium azide in 100ml of distilled H2O. <br />
Store at room temperature.</font></td>
<td bgcolor="#cccccc"><font size="2"> Do not use sodium azide for experiments using live organisms or for reactions that <br />
use horseradish peroxidase.</font></td>
</tr>
<tr>
<td><font size="2"> </font><strong><font size="2">3% Bovine serum albumin<br />
in phosphate-buffered<br />
saline (3% BSA/PBS)</font></strong></td>
<td><font size="2"> Add 3g of BSA (Fraction V) to 100ml of PBS.<br />
Allow to dissolve. <br />
Add o.2 ml of 10% sodium azide.<br />
Store at 4°C.</font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><font size="2"> <strong>1M Tris</strong></font></td>
<td bgcolor="#cccccc"><font size="2"> Dissolve 121g of Tris base in 800ml of distilled H2O.<br />
Adjust to the desired pH by adding concentrated HCl.<br />
Adjust the volume to 1000ml with distilled H2O.<br />
Dispense in convenient volumes and sterilize by autoclaving. <br />
Store at room temperature. </font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><font size="2"> <strong>500mM EDTA</strong></font></td>
<td><font size="2"> Add 186g of disodium ethylene diamine tetraacetate-2H2O<br />
to 400ml of distilled H2O. <br />
Add NaOH to adjust the pH to 8.0 and to allow the EDTA to dissolve. <br />
Bring volume to 500ml with distilled H2O. <br />
Dispense in convenient volumes and sterilize by autoclaving.<br />
Store at room temperature. </font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><font size="2"> </font><strong><font size="2">100% (wt/volume) <br />
Trichloroacetic <br />
acetic acid (TCA)</font></strong></td>
<td bgcolor="#cccccc"><font size="2"> Add 227ml of distilled H2O to a 500-g bottle of TCA</font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><font size="2"> <strong>30% Acrylamide mix</strong></font></td>
<td><font size="2"> Dissolve 29.2g of acrylamide (electrophoresis frade) and 0.8g of N, N'-methylene-bisacrylamide (electrophoresis grade) in 80ml of distilled H2O. <br />
Adjust the volume to 100ml. <br />
Store at room temperature. </font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><font size="2"><strong> 1.5M Tris (pH 8.8</strong><em>)</em></font></td>
<td bgcolor="#cccccc"><font size="2"><em> </em>Dissolve 181.5g of Tris base in 800ml of distilled H2O.<br />
Adjust the pH to 8.8 with concentrated HCl.<br />
Adjust the volume to 1 liter.<br />
Dispense in convenient volumes and sterilize by autoclaving.<br />
Store at room temperature.</font></td>
<td bgcolor="#cccccc"><em><font size="2"> </font></em></td>
</tr>
<tr>
<td><font size="2"><em> </em><strong>1.0M Tris (pH 6.8</strong><em>)</em></font></td>
<td><font size="2"><em> </em>Dissolve 12.1g of Tris base in 80ml of distilled H2O.<br />
Adjust the pH to 6.8 with concentrated HCl.<br />
Adjust the volume to 100 ml.<br />
Dispense in convenient volumes and sterilize by autoclaving.<br />
Store at room temperature.</font></td>
<td><em><font size="2"> </font></em></td>
</tr>
<tr>
<td bgcolor="#cccccc"><font size="2"><em> </em><strong>10% Sodium dodecyl sulfate (SDS)</strong></font></td>
<td bgcolor="#cccccc"><font size="2"> Dissolve 10g of SDS in 100ml of distilled H2O.<br />
Store at room temperature. </font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><strong><font size="2"> 10% Ammonium persulfate (APS)</font></strong></td>
<td><font size="2"> Dissolve 0.5g of ammonium persulfate (electrophoresis grade) in 5ml of distilled H2O. <br />
Store at 4°C. </font></td>
<td><font size="2"> Make fresh solution weekly. </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><strong><font size="2"> 2X Laemmli sample buffer</font></strong></td>
<td bgcolor="#cccccc"><font size="2"> Add 4ml of 10% SDS, 2ml of glycerol, and 1.2ml of 1M Tris (pH6.8) to 2.8ml of distilled H2O.<br />
Add 0.01% bromophenol blue as a tracking dye.<br />
Store at room temperature. </font></td>
<td bgcolor="#cccccc"><font size="2"> To prepare 1X sampole buffer, mix 5 parts 2X, 4 parts water, and 1 part 1M DTT.</font></td>
</tr>
<tr>
<td><strong><font size="2"> 1M Dithiothreitol</font></strong></td>
<td><font size="2"> Dissolce 5g of DTT in 32ml of distilled H2O.<br />
Dispense in 1-ml aliquots. <br />
Store at -20°C. </font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><strong><font size="2"> 10X Laemmli running buffer</font></strong></td>
<td bgcolor="#cccccc"><font size="2"> To a 10;liter carboy, add 8 liters of distilled H2O, 303g of Tris base, 1442g of glycine, and 100g of SDS.<br />
After all the chemicals have dissolved, adjust the pH to 8.3. <br />
Adjust tje vollume ro 10 liters with H2O.<br />
Store at room temperature. </font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><strong><font size="2"> Destain</font></strong></td>
<td><font size="2"> To a 10-liter carboy add 2.5 liters of methanol and 700ml of glacial acetic acid.<br />
Adjust the colume to 10 liters with H2O.<br />
Store at room temperature. </font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><strong><font size="2"> 4% Paraformaldehyde</font></strong></td>
<td bgcolor="#cccccc"><font size="2"> Dissolve EM grade paraformaldehyde in PBS in Pyrex container with stir bar (4g to 100ml)<br />
Add a few drops of NaOH and heat in a hood (keep bottle cap loose_ at 60 °C to dissolve.<br />
Cool to room temperature and adjust pH to 7.4.<br />
Make fresh prior to use.</font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><strong><font size="2"> Gelvatol</font></strong></td>
<td><font size="2"> Dissolve 0.35g of Gelvatol in 3ml of deionized H2O and 1.5ml of glycerol. (PBS can be substituted for water)<br />
Heat the solution with stirring in a boiling water bath until the gelvatol is completely dissolved.<br />
Add anti-fade agents as desired. <br />
Store at 4 °C (can be stored for months).</font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><strong><font size="2"> Glycerol anti-fade mounting medium</font></strong></td>
<td bgcolor="#cccccc"><font size="2"> Dissolve in 100ml og glycerol: 5g of n-propyl gallate, 0.25g of DABCO, 2.5mg of p-phenylenediamine.<br />
Add several pellets of NaOH to bring pH above neutral.<br />
Stir thoroughly (>1day).<br />
Store aliquots at -20°C wrapped in foil.</font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><strong><font size="2"> 1M NaCL/ 0.05M sodium phosphate (pH7.5)</font></strong></td>
<td><font size="2"> For liter: Combine 200ml of 5M NaCl, 500 ml of 0.1M sodium phosphate(pH 7.5), and 300ml of H2O. </font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><strong><font size="2"> NP-40 lysis buffer</font></strong></td>
<td bgcolor="#cccccc"><font size="2"> For 1 liter: Combine 30 ml of 5M NaCl, 100ml of 10% NP-40, 50ml of 1M Tris (pH 8.0), and 820 ml of H2O.<br />
Store at 4°C. </font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><font size="2"> <strong>RIPA buffer</strong></font></td>
<td><font size="2"> For 1 liter: Combine 30 ml of 5M NaCl, 100ml of 10% NP-40, 50ml of DOC, 100ml of 10% SDS, 50ml of 1M Tris (pH 8.0), and 670ml of H2O.<br />
Store at 4°C. </font></td>
<td><font size="2"> </font></td>
</tr>
</tbody>
</table>
<br />
</em></strong>
<table style="WIDTH: 790px; HEIGHT: 959px" cellspacing="1" cellpadding="1" width="790" summary="" border="1">
<tbody>
<tr>
<td bgcolor="#0066ff"> <strong><font color="#ffff99" size="2">Solution</font></strong></td>
<td bgcolor="#0066ff"><strong><font color="#ffff99" size="2"> Method of preparation</font></strong></td>
<td bgcolor="#0066ff"><strong><font color="#ffff99" size="2"> Comments</font></strong></td>
</tr>
<tr>
<td bgcolor="#cccccc"><font size="2"> <strong>Phosphate-buffered saline (PBS)</strong></font></td>
<td bgcolor="#cccccc"><font size="2"> Dissolve 8.0g NaCl, 0.2g of KCl, 1.44g of Na2HPO4, and 0.24g of KH2PO4 in 800ml of distilled H2O. <br />
Adjust the pH to 7.4. <br />
Adjust the volume to 1L. <br />
Dispense in convenient volumes and sterilize by autoclaving. <br />
Store at room temperature. </font></td>
<td bgcolor="#cccccc"><font size="2"> Can be made as a 10X stock.</font></td>
</tr>
<tr>
<td><strong><font size="2"> Tris-buffered saline (TBS) (25mM Tris)</font></strong></td>
<td><font size="2"> Dissolve 8.0g of NaCl, 0.2g of KCl, and 3g of Tris base in 800ml of distilled H2O. <br />
Adjust the pH to 8.0 with 1M HCl. <br />
Adjust the volume to 1 liter.<br />
Dispense in convenient volumes and sterilize by autoclaving. <br />
Store at room temperature. </font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><font size="2"> <strong>10% Sodium azide</strong></font></td>
<td bgcolor="#cccccc"><font size="2"> Dissolve 10g of sodium azide in 100ml of distilled H2O. <br />
Store at room temperature.</font></td>
<td bgcolor="#cccccc"><font size="2"> Do not use sodium azide for experiments using live organisms or for reactions that <br />
use horseradish peroxidase.</font></td>
</tr>
<tr>
<td><font size="2"> </font><strong><font size="2">3% Bovine serum albumin<br />
in phosphate-buffered<br />
saline (3% BSA/PBS)</font></strong></td>
<td><font size="2"> Add 3g of BSA (Fraction V) to 100ml of PBS.<br />
Allow to dissolve. <br />
Add o.2 ml of 10% sodium azide.<br />
Store at 4°C.</font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><font size="2"> <strong>1M Tris</strong></font></td>
<td bgcolor="#cccccc"><font size="2"> Dissolve 121g of Tris base in 800ml of distilled H2O.<br />
Adjust to the desired pH by adding concentrated HCl.<br />
Adjust the volume to 1000ml with distilled H2O.<br />
Dispense in convenient volumes and sterilize by autoclaving. <br />
Store at room temperature. </font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><font size="2"> <strong>500mM EDTA</strong></font></td>
<td><font size="2"> Add 186g of disodium ethylene diamine tetraacetate-2H2O<br />
to 400ml of distilled H2O. <br />
Add NaOH to adjust the pH to 8.0 and to allow the EDTA to dissolve. <br />
Bring volume to 500ml with distilled H2O. <br />
Dispense in convenient volumes and sterilize by autoclaving.<br />
Store at room temperature. </font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><font size="2"> </font><strong><font size="2">100% (wt/volume) <br />
Trichloroacetic <br />
acetic acid (TCA)</font></strong></td>
<td bgcolor="#cccccc"><font size="2"> Add 227ml of distilled H2O to a 500-g bottle of TCA</font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><font size="2"> <strong>30% Acrylamide mix</strong></font></td>
<td><font size="2"> Dissolve 29.2g of acrylamide (electrophoresis frade) and 0.8g of N, N'-methylene-bisacrylamide (electrophoresis grade) in 80ml of distilled H2O. <br />
Adjust the volume to 100ml. <br />
Store at room temperature. </font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><font size="2"><strong> 1.5M Tris (pH 8.8</strong><em>)</em></font></td>
<td bgcolor="#cccccc"><font size="2"><em> </em>Dissolve 181.5g of Tris base in 800ml of distilled H2O.<br />
Adjust the pH to 8.8 with concentrated HCl.<br />
Adjust the volume to 1 liter.<br />
Dispense in convenient volumes and sterilize by autoclaving.<br />
Store at room temperature.</font></td>
<td bgcolor="#cccccc"><em><font size="2"> </font></em></td>
</tr>
<tr>
<td><font size="2"><em> </em><strong>1.0M Tris (pH 6.8</strong><em>)</em></font></td>
<td><font size="2"><em> </em>Dissolve 12.1g of Tris base in 80ml of distilled H2O.<br />
Adjust the pH to 6.8 with concentrated HCl.<br />
Adjust the volume to 100 ml.<br />
Dispense in convenient volumes and sterilize by autoclaving.<br />
Store at room temperature.</font></td>
<td><em><font size="2"> </font></em></td>
</tr>
<tr>
<td bgcolor="#cccccc"><font size="2"><em> </em><strong>10% Sodium dodecyl sulfate (SDS)</strong></font></td>
<td bgcolor="#cccccc"><font size="2"> Dissolve 10g of SDS in 100ml of distilled H2O.<br />
Store at room temperature. </font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><strong><font size="2"> 10% Ammonium persulfate (APS)</font></strong></td>
<td><font size="2"> Dissolve 0.5g of ammonium persulfate (electrophoresis grade) in 5ml of distilled H2O. <br />
Store at 4°C. </font></td>
<td><font size="2"> Make fresh solution weekly. </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><strong><font size="2"> 2X Laemmli sample buffer</font></strong></td>
<td bgcolor="#cccccc"><font size="2"> Add 4ml of 10% SDS, 2ml of glycerol, and 1.2ml of 1M Tris (pH6.8) to 2.8ml of distilled H2O.<br />
Add 0.01% bromophenol blue as a tracking dye.<br />
Store at room temperature. </font></td>
<td bgcolor="#cccccc"><font size="2"> To prepare 1X sampole buffer, mix 5 parts 2X, 4 parts water, and 1 part 1M DTT.</font></td>
</tr>
<tr>
<td><strong><font size="2"> 1M Dithiothreitol</font></strong></td>
<td><font size="2"> Dissolce 5g of DTT in 32ml of distilled H2O.<br />
Dispense in 1-ml aliquots. <br />
Store at -20°C. </font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><strong><font size="2"> 10X Laemmli running buffer</font></strong></td>
<td bgcolor="#cccccc"><font size="2"> To a 10;liter carboy, add 8 liters of distilled H2O, 303g of Tris base, 1442g of glycine, and 100g of SDS.<br />
After all the chemicals have dissolved, adjust the pH to 8.3. <br />
Adjust tje vollume ro 10 liters with H2O.<br />
Store at room temperature. </font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><strong><font size="2"> Destain</font></strong></td>
<td><font size="2"> To a 10-liter carboy add 2.5 liters of methanol and 700ml of glacial acetic acid.<br />
Adjust the colume to 10 liters with H2O.<br />
Store at room temperature. </font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><strong><font size="2"> 4% Paraformaldehyde</font></strong></td>
<td bgcolor="#cccccc"><font size="2"> Dissolve EM grade paraformaldehyde in PBS in Pyrex container with stir bar (4g to 100ml)<br />
Add a few drops of NaOH and heat in a hood (keep bottle cap loose_ at 60 °C to dissolve.<br />
Cool to room temperature and adjust pH to 7.4.<br />
Make fresh prior to use.</font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><strong><font size="2"> Gelvatol</font></strong></td>
<td><font size="2"> Dissolve 0.35g of Gelvatol in 3ml of deionized H2O and 1.5ml of glycerol. (PBS can be substituted for water)<br />
Heat the solution with stirring in a boiling water bath until the gelvatol is completely dissolved.<br />
Add anti-fade agents as desired. <br />
Store at 4 °C (can be stored for months).</font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><strong><font size="2"> Glycerol anti-fade mounting medium</font></strong></td>
<td bgcolor="#cccccc"><font size="2"> Dissolve in 100ml og glycerol: 5g of n-propyl gallate, 0.25g of DABCO, 2.5mg of p-phenylenediamine.<br />
Add several pellets of NaOH to bring pH above neutral.<br />
Stir thoroughly (>1day).<br />
Store aliquots at -20°C wrapped in foil.</font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><strong><font size="2"> 1M NaCL/ 0.05M sodium phosphate (pH7.5)</font></strong></td>
<td><font size="2"> For liter: Combine 200ml of 5M NaCl, 500 ml of 0.1M sodium phosphate(pH 7.5), and 300ml of H2O. </font></td>
<td><font size="2"> </font></td>
</tr>
<tr>
<td bgcolor="#cccccc"><strong><font size="2"> NP-40 lysis buffer</font></strong></td>
<td bgcolor="#cccccc"><font size="2"> For 1 liter: Combine 30 ml of 5M NaCl, 100ml of 10% NP-40, 50ml of 1M Tris (pH 8.0), and 820 ml of H2O.<br />
Store at 4°C. </font></td>
<td bgcolor="#cccccc"><font size="2"> </font></td>
</tr>
<tr>
<td><font size="2"> <strong>RIPA buffer</strong></font></td>
<td><font size="2"> For 1 liter: Combine 30 ml of 5M NaCl, 100ml of 10% NP-40, 50ml of DOC, 100ml of 10% SDS, 50ml of 1M Tris (pH 8.0), and 670ml of H2O.<br />
Store at 4°C. </font></td>
<td><font size="2"> </font></td>
</tr>
</tbody>
</table>