Difference between revisions of "NCBI"

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<br /><br /><br /><font color="#99cc00" size="3"><strong>#NCBI Handbook</strong></font><br />
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<br /><br /><br /><font color="#99cc00" size="3"><strong>#NCBI Handbook<br /><a href="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?call=bv.View..ShowTOC&amp;rid=handbook.TOC&amp;depth=2">http://www.ncbi.nlm.nih.gov/books/bv.fcgi?call=bv.View..ShowTOC&amp;rid=handbook.TOC&amp;depth=2</a></strong></font>
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<div class="toc-text"><dl><dt>Part 1. <a class="toc-passive" href="javascript:BVShow('handbook.part.1')">The Databases</a><br /><br /></dt><dd><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch1d1.pdf" target="_blank"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></a> 1. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.2')">GenBank: The Nucleotide Sequence Database</a><br />Ilene Mizrachi. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>July 27, 2004</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch2d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 2. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.42')">PubMed: The Bibliographic Database</a><br />Kathi Canese, Jennifer Jentsch, and Carol Myers. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch3d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 3. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.94')">Macromolecular Structure Databases</a><br />Eric Sayers and Steve Bryant. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch4d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 4. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.246')">The Taxonomy Project</a><br />Scott Federhen. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch5.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 5. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.ch5')">The Single Nucleotide Polymorphism Database (dbSNP) of Nucleotide Sequence Variation</a><br />Adrienne Kitts and Stephen Sherry. <br /><font size="2"><small>Created: </small><small>October 09, 2002</small><small>, Updated: </small><small>May 03, 2006</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch6d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 6. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.337')">The Gene Expression Omnibus (GEO): A Gene Expression and Hybridization Repository</a><br />Ron Edgar and Alex Lash. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch7d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 7. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.405')">Online Mendelian Inheritance in Man (OMIM): A Directory of Human Genes and Genetic Disorders</a><br />Donna Maglott, Joanna S. Amberger, and Ada Hamosh. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch8d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 8. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.423')">The NCBI BookShelf: Searchable Biomedical Books</a><br />Bart Trawick, Jeff Beck, and Jo McEntyre. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch9d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 9. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.457')">PubMed Central (PMC): An Archive for Literature from Life Sciences Journals</a><br />Jeff Beck and Ed Sequeira. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch10d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 10. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.496')">The SKY/CGH Database for Spectral Karyotyping and Comparative Genomic Hybridization Data</a><br />Turid Knutsen, Vasuki Gobu, Rodger Knaus, Thomas Ried, and Karl Sirotkin. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch11d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 11. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.1776')">The Major Histocompatibility Complex Database, dbMHC</a><br />Adrienne Kitts, Michael Feolo, and Wolfgang Helmberg. <br /><font size="2"><small>Created: </small><small>May 27, 2003</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl></dd></dl><dl><dt>Part 2. <a class="toc-passive" href="javascript:BVShow('handbook.part.537')">Data Flow and Processing</a><br /><br /></dt><dd><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch12d1.pdf" target="_blank"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></a> 12. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.538')">Sequin: A Sequence Submission and Editing Tool</a><br />Jonathan Kans. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch13.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> <a class="toc-passive" href="javascript:BVShow('handbook.chapter.ch13')">13. The Processing of Biological Sequence Data at NCBI</a><br />Karl Sirotkin, Tatiana Tatusova, Eugene Yaschenko, and Mark Cavanaugh. <br /><font size="2"><small>Created: </small><small>October 09, 2002</small><small>, Updated: </small><small>March 14, 2006</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch14d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 14. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.1440')">Genome Assembly and Annotation Process</a><br />Paul Kitts. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl></dd></dl><dl><dt>Part 3. <a class="toc-passive" href="javascript:BVShow('handbook.part.587')">Querying and Linking the Data</a><br /><br /></dt><dd><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch15d1.pdf" target="_blank"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></a> 15. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.588')">The Entrez Search and Retrieval System</a><br />Jim Ostell. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch16d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 16. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.610')">The BLAST Sequence Analysis Tool</a><br />Tom Madden. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch17d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 17. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.650')">LinkOut: Linking to External Resources from Entrez Databases</a><br />Kathy Kwan. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch18d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 18. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.681')">The Reference Sequence (RefSeq) Project</a><br />Kim D. Pruitt, Tatiana Tatusova, and James M. Ostell. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch19d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 19. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.ch19')">Entrez Gene: A Directory of Genes</a><br />Donna Maglott, Kim Pruitt, and Tatiana Tatusova. <br /><font size="2"><small>Created: </small><small>March 3, 2005</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch20d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 20. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.1562')">Using the Map Viewer to Explore Genomes</a><br />Susan M. Dombrowski and Donna Maglott. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch21d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 21. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.857')">UniGene: A Unified View of the Transcriptome</a><br />Joan U. Pontius, Lukas Wagner, and Gregory D. Schuler. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch22d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 22. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.885')">The Clusters of Orthologous Groups (COGs) Database: Phylogenetic Classification of Proteins from Complete Genomes</a><br />Eugene V. Koonin. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl></dd></dl><dl><dt>Part 4. <a class="toc-passive" href="javascript:BVShow('handbook.part.913')">User Support</a><br /><br /></dt><dd><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch23d1.pdf" target="_blank"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></a> 23. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.914')">User Services: Helping You Find Your Way</a><br />David Wheeler and Barbara Rapp. <br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl><dl><dt><a href="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/handbook/ch24d1.pdf" target="_blank"><font size="2"><img alt="PDF Document" src="http://www.ncbi.nlm.nih.gov/books/bookres.fcgi/system_default/pdf.gif" border="0" name="PDFDoc" /></font></a> 24. <a class="toc-passive" href="javascript:BVShow('handbook.chapter.1679')">Exercises: Using Map Viewer</a><br />David Wheeler, Kim Pruitt, Donna Maglott, Susan Dombrowski, and Andrei Gabrelian. <br /><font size="2"><small>Created: </small><small>November 4, 2002</small><small>, Updated: </small><small>August 13, 2003</small><br /></font></dt></dl></dd></dl><dl><dt><a class="toc-passive" href="javascript:BVShow('handbook.glossary.1237')">Glossary</a><br /><font size="2"><small>Created: </small><small>October 9, 2002</small><small>, Updated: </small><small>April 30, 2003</small></font><br /></dt><dd></dd></dl></div>
 

Revision as of 17:28, 13 June 2006

NCBI






# NCBI Database

Database<o:p></o:p>

Pubmed<o:p></o:p>

생물/ 의학 관련 서지정보 데이터베이스<o:p></o:p>

Nucleotide<o:p></o:p>

GenBank, EMBL(European Molecular Biology Laboratory), DDBJ(DNA Database of Japan)을 포함하는 Nucleotide Database<o:p></o:p>

Protein <o:p></o:p>

GenBank, EMBL, 및 DDBJ 등에 등록된 DNA 서열로부터 얻어진 단백질서열을 제공하는 database.

Structure<o:p></o:p>

결정체 연구나 핵자기공명 연구를 통해 얻어진 단백질 구조를 제공. 특히 구조에 대한 data를 기존의 문헌에서 밝혀진 서열 data 등의 정보와 연계시켜 놓은 database.<o:p></o:p>

Genome<o:p></o:p>

다양한 유전체, [[염색체]] [[유전자지도]] 등에 대한 정보를 종합적으로 제공<o:p></o:p>

Population study data sets<o:p></o:p>

인종학, [[계통발생학]], [[돌연변이]] 등에서 발생될 수 있는 배열 문제를 다룸<o:p></o:p>

OMIM <o:p></o:p>

인간의 유전자와 유전자 이상 등에 관한 문헌정보 제공,
유전자 성 레코드, 유전지도, 데이터베이스를 연결할수 있음<o:p></o:p>

Taxonomy<o:p></o:p>

유전학 데이터베이스에서 나타나는 모든 조직체의 분류학 사전 데이터베이스<o:p></o:p>

ProbeSet<o:p></o:p>

유전자 발현 및 핵산혼성화 배열에 유용한 probe에 대한 정보를 제공<o:p></o:p>

3D Domains<o:p></o:p>

NCBI에서 제공하는 단백질의 보존된 영역에 대한 3차구조 자료를 제공.<o:p></o:p>

UNiSTS<o:p></o:p>

여러 data sources에서 얻어진 표지인자 및 유전자지도를 통합하여 단일화 시킨 서열인식부위 정보를 제공<o:p></o:p>

SNP<o:p></o:p>

단일염기다형성 또는 짧은 염기 삭제나 첨가에 의한 다형성에 대한 중심적 정보를 제공<o:p></o:p>




#NCBI Handbook
http://www.ncbi.nlm.nih.gov/books/bv.fcgi?call=bv.View..ShowTOC&rid=handbook.TOC&depth=2

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