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HMMer - Revision history
2026-05-13T04:35:46Z
Revision history for this page on the wiki
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202.30.43.54 at 00:14, 23 August 2007
2007-08-23T00:14:05Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 00:14, 23 August 2007</td>
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<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><font color="#800080" size="4"><strong>HMMer </strong></font>&rarr; <font size="2"><font color="#ff6600">profile HMMs for protein sequence analysis</font>&nbsp;<br /></font><br />HMMer은 hidden markov models을 적용한 수학적인 방법을 기초로하여 개발된것으로,&nbsp;<br />모든 염기 서열을 인지한 후 multiple alignment를 통해 비교 가능한 염기 서열을 찾아낸다.&nbsp;<br /><br /><br /><font size="2"><font size="3"><strong>관련문서</strong></font> : <a href="http://hmmer.wustl.edu/#overview"><font color="#000000">http://hmmer.wustl.edu/#overview</font></a><br /><br /><br /><font size="3"><strong>=============================================================================<br />Download</strong></font> : <a href="http://hmmer.wustl.edu/#download"><font color="#000000">http://hmmer.wustl.edu/#download</font></a><br /><dt><strong><br />Source code version </strong></dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz"><font color="#000000">hmmer-2.3.2.tar.gz</font></a> <br /><br /></dd><dt><strong>AMD Opteron/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz</font></a><br /><font size="-1">Opteron 242, 2x1.6 GHz; SUSE Linux; GCC 3.3.3; --enable-threads --enable-lfs <br />[Contributed by Martin Gollery, University of Nevada, Reno.]<br />RPMs built with the <a href="http://www.pgroup.com/"><font color="#000000">Portland Group</font></a> C compiler are also available from Joe Landman and <a href="http://www.scalableinformatics.com/"><font color="#000000">Scalable Informatics, LLC</font></a>:<br />you can download <a href="http://downloads.scalableinformatics.com/downloads/hmmer/hmmer-2.3.2-5pgi.x86_64_pgi.rpm"><font color="#000000">hmmer-2.3.2-5pgi.x86_64_pgi.rpm</font></a> from their site. </font><br /><br /></dd><dt><strong>Apple Macintosh PowerPC OS/X</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz"><font color="#000000">hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz</font></a> <br /><font size="-1">Apple PowerPC; 2x G4/1.25Ghz; OS/X Darwin 6.8; --enable-threads --enable-lfs --enable-altivec; CFLAGS=&quot;-O&quot; <br />Includes Altivec optimizations contributed by Erik Lindahl, Stanford University. </font><br /><br /></dd><dt><strong>Compaq Alpha Tru64</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-tru64.tar.gz"><font color="#000000">hmmer-2.3.2.bin.alpha-tru64.tar.gz</font></a><br /><font size="-1">Compaq Alpha ES40; Tru64 5.1B; --enable-threads --enable-lfs; CC=cc CFLAGS=-O </font><br /><br /></dd><dt><strong>Compaq Alpha Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.alpha-linux.tar.gz</font></a><br /><font size="-1">Compaq Alpha ES40; Red Hat Alpha Linux 7.1; --enable-threads --enable-lfs; CFLAGS=-O </font></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font color="#800080" size="4"><strong>HMMer </strong></font>&rarr; <font size="2"><font color="#ff6600">profile HMMs for protein sequence analysis</font>&nbsp;<br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></font><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>HMMer은 hidden markov models을 적용한 수학적인 방법을 기초로하여 개발된것으로,&nbsp;<br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>모든 염기 서열을 인지한 후 multiple alignment를 통해 비교 가능한 염기 서열을 찾아낸다.&nbsp;<br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="2"><font size="3"><strong>관련문서</strong></font> : <a href="http://hmmer.wustl.edu/#overview"><font color="#000000">http://hmmer.wustl.edu/#overview</font></a><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"><strong>관련소프트웨어</strong> : <a href="http://www.clcbio.com/index.php?id=971">http://www.clcbio.com/index.php?id=971</a><a href="http://hmmer.wustl.edu/#overview"><font color="#000000"></font></a><br /></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"><br /></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"><br /></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="3"><strong>=============================================================================<br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Download</strong></font> : <a href="http://hmmer.wustl.edu/#download"><font color="#000000">http://hmmer.wustl.edu/#download</font></a><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><dt><strong><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Source code version </strong></dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz"><font color="#000000">hmmer-2.3.2.tar.gz</font></a> <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>AMD Opteron/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz</font></a><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">Opteron 242, 2x1.6 GHz; SUSE Linux; GCC 3.3.3; --enable-threads --enable-lfs <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[Contributed by Martin Gollery, University of Nevada, Reno.]<br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>RPMs built with the <a href="http://www.pgroup.com/"><font color="#000000">Portland Group</font></a> C compiler are also available from Joe Landman and <a href="http://www.scalableinformatics.com/"><font color="#000000">Scalable Informatics, LLC</font></a>:<br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>you can download <a href="http://downloads.scalableinformatics.com/downloads/hmmer/hmmer-2.3.2-5pgi.x86_64_pgi.rpm"><font color="#000000">hmmer-2.3.2-5pgi.x86_64_pgi.rpm</font></a> from their site. </font><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Apple Macintosh PowerPC OS/X</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz"><font color="#000000">hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz</font></a> <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">Apple PowerPC; 2x G4/1.25Ghz; OS/X Darwin 6.8; --enable-threads --enable-lfs --enable-altivec; CFLAGS=&quot;-O&quot; <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Includes Altivec optimizations contributed by Erik Lindahl, Stanford University. </font><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Compaq Alpha Tru64</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-tru64.tar.gz"><font color="#000000">hmmer-2.3.2.bin.alpha-tru64.tar.gz</font></a><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">Compaq Alpha ES40; Tru64 5.1B; --enable-threads --enable-lfs; CC=cc CFLAGS=-O </font><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Compaq Alpha Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.alpha-linux.tar.gz</font></a><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">Compaq Alpha ES40; Red Hat Alpha Linux 7.1; --enable-threads --enable-lfs; CFLAGS=-O </font></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-hp-linux.tar.gz</font></a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; Linux 2.4.18-e.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), HP/UX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz</font></a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; HP/UX 11.22; --enable-threads --enable-lfs; CC=cc CFLAGS=&quot;-O&quot; </font></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-hp-linux.tar.gz</font></a> <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">HP rx2600; 2xItanium2/900/1.5; Linux 2.4.18-e.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), HP/UX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz</font></a> <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">HP rx2600; 2xItanium2/900/1.5; HP/UX 11.22; --enable-threads --enable-lfs; CC=cc CFLAGS=&quot;-O&quot; </font></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>IBM Power4, Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz</font></a> <br /><font size="-1">IBM pSeries; Power4; SusE Linux 8 (SLES8); --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O -q64 -qtune=pwr4 -qcache=auto&quot;<br />[Provided by Bob Arenburg and IBM Life Sciences.] </font></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>IBM Power4, Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz</font></a> <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">IBM pSeries; Power4; SusE Linux 8 (SLES8); --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O -q64 -qtune=pwr4 -qcache=auto&quot;<br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[Provided by Bob Arenburg and IBM Life Sciences.] </font></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>IBM Power4, AIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-aix.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ibm-aix.tar.gz</font></a> <br /><font size="-1">IBM pSeries 630; 4xPower4/1.2GHz; AIX 5.2; --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O2&quot;<br />On large multiprocessor systems (8 cpus or more), you want to add &quot;-bmaxdata:0x80000000&quot; to CFLAGS and recompile to enable AIX's &quot;Large Program Support&quot;; otherwise, AIX only allows a program to allocate 256 MB of RAM by default. </font><br /><br /></dd><dt><strong>Intel FreeBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-freebsd.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-freebsd.tar.gz</font></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; FreeBSD 4.7; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel GNU/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-linux.tar.gz</font></a> <br />Or, as an RPM: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2-1static_pvm.i686.rpm"><font color="#000000">hmmer-2.3.2-1static_pvm.i686.rpm</font></a><br /><font size="-1">Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2; --enable-threads --enable-lfs --enable-pvm; CC=icc CFLAGS=&quot;-O3 -axMKW -static&quot; <br />the RPM spec file is available: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-pvm.spec"><font color="#000000">hmmer-pvm.spec</font></a> </font><br /><br /></dd><dt><strong>Intel OpenBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-openbsd.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-openbsd.tar.gz</font></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; OpenBSD 3.2; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel Solaris</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-solaris.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-solaris.tar.gz</font></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; x86 Solaris 9; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz</font></a> <br /><font size="-1">Silicon Graphics Altix 3000; 16xItanium2/900/1.5; Linux 2.4.19; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics MIPS IRIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.sgi-irix64.tar.gz"><font color="#000000">hmmer-2.3.2.bin.sgi-irix64.tar.gz</font></a> <br /><font size="-1">Silicon Graphics Origin200; 4xMIPS R10K/180,195/2; IRIX 6.5.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Sun Sparc Solaris</strong> </dt><dd>[The Solaris box in our compile farm has recently decided to quit, after years of faithful service. For now, build from the <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz"><font color="#000000">source release</font></a> instead. We have one report that 2.3.2 does not compile cleanly on Solaris 8: you may need to manually add -lnsl to LIBS in src/Makefile, after running ./configure. We will resolve this in a subsequent release, as soon as we have access to Solaris again.]&nbsp;<br /><strong><font size="3">=============================================================================</font></strong><br /><!-- Saved in parser cache with key Biopedia:pcache:idhash:8269-0!1!0!0!!ko!2 and timestamp 20060607120252 --></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>IBM Power4, AIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-aix.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ibm-aix.tar.gz</font></a> <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">IBM pSeries 630; 4xPower4/1.2GHz; AIX 5.2; --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O2&quot;<br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>On large multiprocessor systems (8 cpus or more), you want to add &quot;-bmaxdata:0x80000000&quot; to CFLAGS and recompile to enable AIX's &quot;Large Program Support&quot;; otherwise, AIX only allows a program to allocate 256 MB of RAM by default. </font><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Intel FreeBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-freebsd.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-freebsd.tar.gz</font></a> <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; FreeBSD 4.7; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Intel GNU/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-linux.tar.gz</font></a> <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Or, as an RPM: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2-1static_pvm.i686.rpm"><font color="#000000">hmmer-2.3.2-1static_pvm.i686.rpm</font></a><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2; --enable-threads --enable-lfs --enable-pvm; CC=icc CFLAGS=&quot;-O3 -axMKW -static&quot; <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>the RPM spec file is available: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-pvm.spec"><font color="#000000">hmmer-pvm.spec</font></a> </font><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Intel OpenBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-openbsd.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-openbsd.tar.gz</font></a> <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; OpenBSD 3.2; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Intel Solaris</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-solaris.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-solaris.tar.gz</font></a> <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; x86 Solaris 9; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Silicon Graphics IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz</font></a> <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">Silicon Graphics Altix 3000; 16xItanium2/900/1.5; Linux 2.4.19; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Silicon Graphics MIPS IRIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.sgi-irix64.tar.gz"><font color="#000000">hmmer-2.3.2.bin.sgi-irix64.tar.gz</font></a> <br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font size="-1">Silicon Graphics Origin200; 4xMIPS R10K/180,195/2; IRIX 6.5.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Sun Sparc Solaris</strong> </dt><dd>[The Solaris box in our compile farm has recently decided to quit, after years of faithful service. For now, build from the <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz"><font color="#000000">source release</font></a> instead. We have one report that 2.3.2 does not compile cleanly on Solaris 8: you may need to manually add -lnsl to LIBS in src/Makefile, after running ./configure. We will resolve this in a subsequent release, as soon as we have access to Solaris again.]&nbsp;<br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><strong><font size="3">=============================================================================</font></strong><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><!-- Saved in parser cache with key Biopedia:pcache:idhash:8269-0!1!0!0!!ko!2 and timestamp 20060607120252 --></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><div class="printfooter">원본 주소 - '<a href="http://biocc.ngic.re.kr/Biopedia/Biowiki/index.php/HMMer"><font color="#5a3696">http://biocc.ngic.re.kr/Biopedia/Biowiki/index.php/HMMer</font></a>'</div></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><div class="printfooter">원본 주소 - '<a href="http://biocc.ngic.re.kr/Biopedia/Biowiki/index.php/HMMer"><font color="#5a3696">http://biocc.ngic.re.kr/Biopedia/Biowiki/index.php/HMMer</font></a>'</div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- end content --></dd></font></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- end content --></dd></font></div></td></tr>
</table>
202.30.43.54
http://Opengenome.net/index.php?title=HMMer&diff=10938&oldid=prev
Ksjung at 12:03, 7 June 2006
2006-06-07T12:03:35Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 12:03, 7 June 2006</td>
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<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><font color="#800080" size="4"><strong>HMMer </strong></font>&rarr; <font size="2"><font color="#ff6600">profile HMMs for protein sequence analysis</font>&nbsp;<br /></font><br />HMMer은 hidden markov models을 적용한 수학적인 방법을 기초로하여 개발된것으로,&nbsp;<br />모든 염기 서열을 인지한 후 multiple alignment를 통해 비교 가능한 염기 서열을 찾아낸다.&nbsp;<br /><br /><br /><font size="2"><font size="3"><strong>관련문서</strong></font> : <a href="http://hmmer.wustl.edu/#overview"><font color="#000000">http://hmmer.wustl.edu/#overview</font></a><br /><br /><br /><font size="3"><strong>=============================================================================<br />Download</strong></font> : <a href="http://hmmer.wustl.edu/#download"><font color="#000000">http://hmmer.wustl.edu/#download</font></a><br /><dt><strong><br />Source code version</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz"><font color="#000000">hmmer-2.3.2.tar.gz</font></a> <br /><br /></dd><dt><strong>AMD Opteron/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz</font></a><br /><font size="-1">Opteron 242, 2x1.6 GHz; SUSE Linux; GCC 3.3.3; --enable-threads --enable-lfs <br />[Contributed by Martin Gollery, University of Nevada, Reno.]<br />RPMs built with the <a href="http://www.pgroup.com/"><font color="#000000">Portland Group</font></a> C compiler are also available from Joe Landman and <a href="http://www.scalableinformatics.com/"><font color="#000000">Scalable Informatics, LLC</font></a>:<br />you can download <a href="http://downloads.scalableinformatics.com/downloads/hmmer/hmmer-2.3.2-5pgi.x86_64_pgi.rpm"><font color="#000000">hmmer-2.3.2-5pgi.x86_64_pgi.rpm</font></a> from their site. </font><br /><br /></dd><dt><strong>Apple Macintosh PowerPC OS/X</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz"><font color="#000000">hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz</font></a> <br /><font size="-1">Apple PowerPC; 2x G4/1.25Ghz; OS/X Darwin 6.8; --enable-threads --enable-lfs --enable-altivec; CFLAGS=&quot;-O&quot; <br />Includes Altivec optimizations contributed by Erik Lindahl, Stanford University. </font><br /><br /></dd><dt><strong>Compaq Alpha Tru64</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-tru64.tar.gz"><font color="#000000">hmmer-2.3.2.bin.alpha-tru64.tar.gz</font></a><br /><font size="-1">Compaq Alpha ES40; Tru64 5.1B; --enable-threads --enable-lfs; CC=cc CFLAGS=-O </font><br /><br /></dd><dt><strong>Compaq Alpha Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.alpha-linux.tar.gz</font></a><br /><font size="-1">Compaq Alpha ES40; Red Hat Alpha Linux 7.1; --enable-threads --enable-lfs; CFLAGS=-O </font></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font color="#800080" size="4"><strong>HMMer </strong></font>&rarr; <font size="2"><font color="#ff6600">profile HMMs for protein sequence analysis</font>&nbsp;<br /></font><br />HMMer은 hidden markov models을 적용한 수학적인 방법을 기초로하여 개발된것으로,&nbsp;<br />모든 염기 서열을 인지한 후 multiple alignment를 통해 비교 가능한 염기 서열을 찾아낸다.&nbsp;<br /><br /><br /><font size="2"><font size="3"><strong>관련문서</strong></font> : <a href="http://hmmer.wustl.edu/#overview"><font color="#000000">http://hmmer.wustl.edu/#overview</font></a><br /><br /><br /><font size="3"><strong>=============================================================================<br />Download</strong></font> : <a href="http://hmmer.wustl.edu/#download"><font color="#000000">http://hmmer.wustl.edu/#download</font></a><br /><dt><strong><br />Source code version </strong></dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz"><font color="#000000">hmmer-2.3.2.tar.gz</font></a> <br /><br /></dd><dt><strong>AMD Opteron/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz</font></a><br /><font size="-1">Opteron 242, 2x1.6 GHz; SUSE Linux; GCC 3.3.3; --enable-threads --enable-lfs <br />[Contributed by Martin Gollery, University of Nevada, Reno.]<br />RPMs built with the <a href="http://www.pgroup.com/"><font color="#000000">Portland Group</font></a> C compiler are also available from Joe Landman and <a href="http://www.scalableinformatics.com/"><font color="#000000">Scalable Informatics, LLC</font></a>:<br />you can download <a href="http://downloads.scalableinformatics.com/downloads/hmmer/hmmer-2.3.2-5pgi.x86_64_pgi.rpm"><font color="#000000">hmmer-2.3.2-5pgi.x86_64_pgi.rpm</font></a> from their site. </font><br /><br /></dd><dt><strong>Apple Macintosh PowerPC OS/X</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz"><font color="#000000">hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz</font></a> <br /><font size="-1">Apple PowerPC; 2x G4/1.25Ghz; OS/X Darwin 6.8; --enable-threads --enable-lfs --enable-altivec; CFLAGS=&quot;-O&quot; <br />Includes Altivec optimizations contributed by Erik Lindahl, Stanford University. </font><br /><br /></dd><dt><strong>Compaq Alpha Tru64</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-tru64.tar.gz"><font color="#000000">hmmer-2.3.2.bin.alpha-tru64.tar.gz</font></a><br /><font size="-1">Compaq Alpha ES40; Tru64 5.1B; --enable-threads --enable-lfs; CC=cc CFLAGS=-O </font><br /><br /></dd><dt><strong>Compaq Alpha Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.alpha-linux.tar.gz</font></a><br /><font size="-1">Compaq Alpha ES40; Red Hat Alpha Linux 7.1; --enable-threads --enable-lfs; CFLAGS=-O </font></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><p><del class="diffchange diffchange-inline"><!--        <dt> <strong>Hewlett/Packard PA/RISC, HP/UX</strong> --><!--        <dd> Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.hp-hpux.tar.gz"> --><!--      hmmer-2.3.2.bin.hp-hpux.tar.gz</a> <br> --><!--      <font size=-1> --><!--      <br> --><!--      Does not support large files (>2 GB).  --><!--      </font> --><!--          <br><br> --></del></p></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><p><ins class="diffchange diffchange-inline">&nbsp;</ins></p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-hp-linux.tar.gz</font></a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; Linux 2.4.18-e.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), HP/UX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz</font></a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; HP/UX 11.22; --enable-threads --enable-lfs; CC=cc CFLAGS=&quot;-O&quot; </font></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-hp-linux.tar.gz</font></a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; Linux 2.4.18-e.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), HP/UX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz</font></a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; HP/UX 11.22; --enable-threads --enable-lfs; CC=cc CFLAGS=&quot;-O&quot; </font></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>IBM Power4, Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz</font></a> <br /><font size="-1">IBM pSeries; Power4; SusE Linux 8 (SLES8); --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O -q64 -qtune=pwr4 -qcache=auto&quot;<br />[Provided by Bob Arenburg and IBM Life Sciences.] </font></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>IBM Power4, Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz</font></a> <br /><font size="-1">IBM pSeries; Power4; SusE Linux 8 (SLES8); --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O -q64 -qtune=pwr4 -qcache=auto&quot;<br />[Provided by Bob Arenburg and IBM Life Sciences.] </font></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>IBM Power4, AIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-aix.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ibm-aix.tar.gz</font></a> <br /><font size="-1">IBM pSeries 630; 4xPower4/1.2GHz; AIX 5.2; --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O2&quot;<br />On large multiprocessor systems (8 cpus or more), you want to add &quot;-bmaxdata:0x80000000&quot; to CFLAGS and recompile to enable AIX's &quot;Large Program Support&quot;; otherwise, AIX only allows a program to allocate 256 MB of RAM by default. </font><br /><br /></dd><dt><strong>Intel FreeBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-freebsd.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-freebsd.tar.gz</font></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; FreeBSD 4.7; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel GNU/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-linux.tar.gz</font></a> <br />Or, as an RPM: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2-1static_pvm.i686.rpm"><font color="#000000">hmmer-2.3.2-1static_pvm.i686.rpm</font></a><br /><font size="-1">Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2; --enable-threads --enable-lfs --enable-pvm; CC=icc CFLAGS=&quot;-O3 -axMKW -static&quot; <br />the RPM spec file is available: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-pvm.spec"><font color="#000000">hmmer-pvm.spec</font></a> </font><br /><br /></dd><dt><strong>Intel OpenBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-openbsd.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-openbsd.tar.gz</font></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; OpenBSD 3.2; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel Solaris</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-solaris.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-solaris.tar.gz</font></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; x86 Solaris 9; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz</font></a> <br /><font size="-1">Silicon Graphics Altix 3000; 16xItanium2/900/1.5; Linux 2.4.19; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics MIPS IRIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.sgi-irix64.tar.gz"><font color="#000000">hmmer-2.3.2.bin.sgi-irix64.tar.gz</font></a> <br /><font size="-1">Silicon Graphics Origin200; 4xMIPS R10K/180,195/2; IRIX 6.5.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Sun Sparc Solaris</strong> </dt><dd>[The Solaris box in our compile farm has recently decided to quit, after years of faithful service. For now, build from the <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz"><font color="#000000">source release</font></a> instead. We have one report that 2.3.2 does not compile cleanly on Solaris 8: you may need to manually add -lnsl to LIBS in src/Makefile, after running ./configure. We will resolve this in a subsequent release, as soon as we have access to Solaris again.]&nbsp;<br /><strong><font size="3">=============================================================================</font></strong><br /></dd></font></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>IBM Power4, AIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-aix.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ibm-aix.tar.gz</font></a> <br /><font size="-1">IBM pSeries 630; 4xPower4/1.2GHz; AIX 5.2; --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O2&quot;<br />On large multiprocessor systems (8 cpus or more), you want to add &quot;-bmaxdata:0x80000000&quot; to CFLAGS and recompile to enable AIX's &quot;Large Program Support&quot;; otherwise, AIX only allows a program to allocate 256 MB of RAM by default. </font><br /><br /></dd><dt><strong>Intel FreeBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-freebsd.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-freebsd.tar.gz</font></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; FreeBSD 4.7; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel GNU/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-linux.tar.gz</font></a> <br />Or, as an RPM: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2-1static_pvm.i686.rpm"><font color="#000000">hmmer-2.3.2-1static_pvm.i686.rpm</font></a><br /><font size="-1">Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2; --enable-threads --enable-lfs --enable-pvm; CC=icc CFLAGS=&quot;-O3 -axMKW -static&quot; <br />the RPM spec file is available: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-pvm.spec"><font color="#000000">hmmer-pvm.spec</font></a> </font><br /><br /></dd><dt><strong>Intel OpenBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-openbsd.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-openbsd.tar.gz</font></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; OpenBSD 3.2; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel Solaris</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-solaris.tar.gz"><font color="#000000">hmmer-2.3.2.bin.intel-solaris.tar.gz</font></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; x86 Solaris 9; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz"><font color="#000000">hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz</font></a> <br /><font size="-1">Silicon Graphics Altix 3000; 16xItanium2/900/1.5; Linux 2.4.19; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics MIPS IRIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.sgi-irix64.tar.gz"><font color="#000000">hmmer-2.3.2.bin.sgi-irix64.tar.gz</font></a> <br /><font size="-1">Silicon Graphics Origin200; 4xMIPS R10K/180,195/2; IRIX 6.5.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Sun Sparc Solaris</strong> </dt><dd>[The Solaris box in our compile farm has recently decided to quit, after years of faithful service. For now, build from the <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz"><font color="#000000">source release</font></a> instead. We have one report that 2.3.2 does not compile cleanly on Solaris 8: you may need to manually add -lnsl to LIBS in src/Makefile, after running ./configure. We will resolve this in a subsequent release, as soon as we have access to Solaris again.]&nbsp;<br /><strong><font size="3">=============================================================================</font></strong><br /<ins class="diffchange diffchange-inline">><!-- Saved in parser cache with key Biopedia:pcache:idhash:8269-0!1!0!0!!ko!2 and timestamp 20060607120252 --></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"><div class="printfooter">원본 주소 - '<a href="http://biocc.ngic.re.kr/Biopedia/Biowiki/index.php/HMMer"><font color="#5a3696">http://biocc.ngic.re.kr/Biopedia/Biowiki/index.php/HMMer</font></a>'</div></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"><!-- end content --</ins>></dd></font></div></td></tr>
</table>
Ksjung
http://Opengenome.net/index.php?title=HMMer&diff=10937&oldid=prev
Ksjung at 12:02, 7 June 2006
2006-06-07T12:02:52Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 12:02, 7 June 2006</td>
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<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><font color="#800080" size="4"><strong>HMMer </strong></font>&rarr; <font <del class="diffchange diffchange-inline">color</del>="<del class="diffchange diffchange-inline">#ff00ff</del>" <del class="diffchange diffchange-inline">size</del>="<del class="diffchange diffchange-inline">2</del>"><del class="diffchange diffchange-inline">Hidden Markov Model package from Sean Eddy</del></font><br /><br />HMMer은 hidden markov models을 적용한 수학적인 방법을 기초로하여 개발된것으로,&nbsp;<br />모든 염기 서열을 인지한 후 multiple alignment를 통해 비교 가능한 염기 서열을 찾아낸다.&nbsp;<br /><br /><br /><font size="2"><font <del class="diffchange diffchange-inline">color="#99cc00" </del>size="3"><strong>관련문서</strong></font> : <a href="http://hmmer.wustl.edu/#overview">http://hmmer.wustl.edu/#overview</a><br /><br /><br /><font <del class="diffchange diffchange-inline">color="#99cc00" </del>size="3"><strong>=============================================================================<br />Download</strong></font> : <a href="http://hmmer.wustl.edu/#download">http://hmmer.wustl.edu/#download</a><br /><dt><strong><br />Source code version</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz">hmmer-2.3.2.tar.gz</a> <br /><br /></dd><dt><strong>AMD Opteron/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz">hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz</a><br /><font size="-1">Opteron 242, 2x1.6 GHz; SUSE Linux; GCC 3.3.3; --enable-threads --enable-lfs <br />[Contributed by Martin Gollery, University of Nevada, Reno.]<br />RPMs built with the <a href="http://www.pgroup.com/">Portland Group</a> C compiler are also available from Joe Landman and <a href="http://www.scalableinformatics.com/">Scalable Informatics, LLC</a>:<br />you can download <a href="http://downloads.scalableinformatics.com/downloads/hmmer/hmmer-2.3.2-5pgi.x86_64_pgi.rpm">hmmer-2.3.2-5pgi.x86_64_pgi.rpm</a> from their site. </font><br /><br /></dd><dt><strong>Apple Macintosh PowerPC OS/X</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz">hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz</a> <br /><font size="-1">Apple PowerPC; 2x G4/1.25Ghz; OS/X Darwin 6.8; --enable-threads --enable-lfs --enable-altivec; CFLAGS=&quot;-O&quot; <br />Includes Altivec optimizations contributed by Erik Lindahl, Stanford University. </font><br /><br /></dd><dt><strong>Compaq Alpha Tru64</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-tru64.tar.gz">hmmer-2.3.2.bin.alpha-tru64.tar.gz</a><br /><font size="-1">Compaq Alpha ES40; Tru64 5.1B; --enable-threads --enable-lfs; CC=cc CFLAGS=-O </font><br /><br /></dd><dt><strong>Compaq Alpha Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-linux.tar.gz">hmmer-2.3.2.bin.alpha-linux.tar.gz</a><br /><font size="-1">Compaq Alpha ES40; Red Hat Alpha Linux 7.1; --enable-threads --enable-lfs; CFLAGS=-O </font></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font color="#800080" size="4"><strong>HMMer </strong></font>&rarr; <font <ins class="diffchange diffchange-inline">size</ins>="<ins class="diffchange diffchange-inline">2</ins>"<ins class="diffchange diffchange-inline">><font color</ins>="<ins class="diffchange diffchange-inline">#ff6600</ins>"><ins class="diffchange diffchange-inline">profile HMMs for protein sequence analysis</ins></font><ins class="diffchange diffchange-inline">&nbsp;</ins><br /<ins class="diffchange diffchange-inline">></font</ins>><br />HMMer은 hidden markov models을 적용한 수학적인 방법을 기초로하여 개발된것으로,&nbsp;<br />모든 염기 서열을 인지한 후 multiple alignment를 통해 비교 가능한 염기 서열을 찾아낸다.&nbsp;<br /><br /><br /><font size="2"><font size="3"><strong>관련문서</strong></font> : <a href="http://hmmer.wustl.edu/#overview<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">http://hmmer.wustl.edu/#overview<ins class="diffchange diffchange-inline"></font></ins></a><br /><br /><br /><font size="3"><strong>=============================================================================<br />Download</strong></font> : <a href="http://hmmer.wustl.edu/#download<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">http://hmmer.wustl.edu/#download<ins class="diffchange diffchange-inline"></font></ins></a><br /><dt><strong><br />Source code version</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a> <br /><br /></dd><dt><strong>AMD Opteron/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a><br /><font size="-1">Opteron 242, 2x1.6 GHz; SUSE Linux; GCC 3.3.3; --enable-threads --enable-lfs <br />[Contributed by Martin Gollery, University of Nevada, Reno.]<br />RPMs built with the <a href="http://www.pgroup.com/<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">Portland Group<ins class="diffchange diffchange-inline"></font></ins></a> C compiler are also available from Joe Landman and <a href="http://www.scalableinformatics.com/<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">Scalable Informatics, LLC<ins class="diffchange diffchange-inline"></font></ins></a>:<br />you can download <a href="http://downloads.scalableinformatics.com/downloads/hmmer/hmmer-2.3.2-5pgi.x86_64_pgi.rpm<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2-5pgi.x86_64_pgi.rpm<ins class="diffchange diffchange-inline"></font></ins></a> from their site. </font><br /><br /></dd><dt><strong>Apple Macintosh PowerPC OS/X</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a> <br /><font size="-1">Apple PowerPC; 2x G4/1.25Ghz; OS/X Darwin 6.8; --enable-threads --enable-lfs --enable-altivec; CFLAGS=&quot;-O&quot; <br />Includes Altivec optimizations contributed by Erik Lindahl, Stanford University. </font><br /><br /></dd><dt><strong>Compaq Alpha Tru64</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-tru64.tar.gz<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2.bin.alpha-tru64.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a><br /><font size="-1">Compaq Alpha ES40; Tru64 5.1B; --enable-threads --enable-lfs; CC=cc CFLAGS=-O </font><br /><br /></dd><dt><strong>Compaq Alpha Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-linux.tar.gz<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2.bin.alpha-linux.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a><br /><font size="-1">Compaq Alpha ES40; Red Hat Alpha Linux 7.1; --enable-threads --enable-lfs; CFLAGS=-O </font></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p><!--        <dt> <strong>Hewlett/Packard PA/RISC, HP/UX</strong> --><!--        <dd> Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.hp-hpux.tar.gz"> --><!--      hmmer-2.3.2.bin.hp-hpux.tar.gz</a> <br> --><!--      <font size=-1> --><!--      <br> --><!--      Does not support large files (>2 GB).  --><!--      </font> --><!--          <br><br> --></p></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p><!--        <dt> <strong>Hewlett/Packard PA/RISC, HP/UX</strong> --><!--        <dd> Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.hp-hpux.tar.gz"> --><!--      hmmer-2.3.2.bin.hp-hpux.tar.gz</a> <br> --><!--      <font size=-1> --><!--      <br> --><!--      Does not support large files (>2 GB).  --><!--      </font> --><!--          <br><br> --></p></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-linux.tar.gz">hmmer-2.3.2.bin.ia64-hp-linux.tar.gz</a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; Linux 2.4.18-e.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), HP/UX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz">hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz</a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; HP/UX 11.22; --enable-threads --enable-lfs; CC=cc CFLAGS=&quot;-O&quot; </font></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-linux.tar.gz<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2.bin.ia64-hp-linux.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; Linux 2.4.18-e.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), HP/UX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; HP/UX 11.22; --enable-threads --enable-lfs; CC=cc CFLAGS=&quot;-O&quot; </font></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>IBM Power4, Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz">hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz</a> <br /><font size="-1">IBM pSeries; Power4; SusE Linux 8 (SLES8); --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O -q64 -qtune=pwr4 -qcache=auto&quot;<br />[Provided by Bob Arenburg and IBM Life Sciences.] </font></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>IBM Power4, Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a> <br /><font size="-1">IBM pSeries; Power4; SusE Linux 8 (SLES8); --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O -q64 -qtune=pwr4 -qcache=auto&quot;<br />[Provided by Bob Arenburg and IBM Life Sciences.] </font></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p>&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>IBM Power4, AIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-aix.tar.gz">hmmer-2.3.2.bin.ibm-aix.tar.gz</a> <br /><font size="-1">IBM pSeries 630; 4xPower4/1.2GHz; AIX 5.2; --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O2&quot;<br />On large multiprocessor systems (8 cpus or more), you want to add &quot;-bmaxdata:0x80000000&quot; to CFLAGS and recompile to enable AIX's &quot;Large Program Support&quot;; otherwise, AIX only allows a program to allocate 256 MB of RAM by default. </font><br /><br /></dd><dt><strong>Intel FreeBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-freebsd.tar.gz">hmmer-2.3.2.bin.intel-freebsd.tar.gz</a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; FreeBSD 4.7; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel GNU/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-linux.tar.gz"><del class="diffchange diffchange-inline">hmmer</del>-2.3.2.bin.intel-linux.tar.gz</a> <br />Or, as an RPM: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2-1static_pvm.i686.rpm">hmmer-2.3.2-1static_pvm.i686.rpm</a><br /><font size="-1">Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2; --enable-threads --enable-lfs --enable-pvm; CC=icc CFLAGS=&quot;-O3 -axMKW -static&quot; <br />the RPM spec file is available: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-pvm.spec"><del class="diffchange diffchange-inline">hmmer</del>-pvm.spec</a> </font><br /><br /></dd><dt><strong>Intel OpenBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-openbsd.tar.gz">hmmer-2.3.2.bin.intel-openbsd.tar.gz</a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; OpenBSD 3.2; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel Solaris</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-solaris.tar.gz"><del class="diffchange diffchange-inline">hmmer</del>-2.3.2.bin.intel-solaris.tar.gz</a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; x86 Solaris 9; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz">hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz</a> <br /><font size="-1">Silicon Graphics Altix 3000; 16xItanium2/900/1.5; Linux 2.4.19; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics MIPS IRIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.sgi-irix64.tar.gz"><del class="diffchange diffchange-inline">hmmer</del>-2.3.2.bin.sgi-irix64.tar.gz</a> <br /><font size="-1">Silicon Graphics Origin200; 4xMIPS R10K/180,195/2; IRIX 6.5.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Sun Sparc Solaris</strong> </dt><dd>[The Solaris box in our compile farm has recently decided to quit, after years of faithful service. For now, build from the <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz">source release</a> instead. We have one report that 2.3.2 does not compile cleanly on Solaris 8: you may need to manually add -lnsl to LIBS in src/Makefile, after running ./configure. We will resolve this in a subsequent release, as soon as we have access to Solaris again.]&nbsp;<br /><strong><font <del class="diffchange diffchange-inline">color="#99cc00" </del>size="3">=============================================================================</font></strong><br /></dd></font></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>IBM Power4, AIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-aix.tar.gz<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2.bin.ibm-aix.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a> <br /><font size="-1">IBM pSeries 630; 4xPower4/1.2GHz; AIX 5.2; --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O2&quot;<br />On large multiprocessor systems (8 cpus or more), you want to add &quot;-bmaxdata:0x80000000&quot; to CFLAGS and recompile to enable AIX's &quot;Large Program Support&quot;; otherwise, AIX only allows a program to allocate 256 MB of RAM by default. </font><br /><br /></dd><dt><strong>Intel FreeBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-freebsd.tar.gz<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2.bin.intel-freebsd.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; FreeBSD 4.7; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel GNU/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-linux.tar.gz"><ins class="diffchange diffchange-inline"><font color="#000000">hmmer</ins>-2.3.2.bin.intel-linux.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a> <br />Or, as an RPM: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2-1static_pvm.i686.rpm<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2-1static_pvm.i686.rpm<ins class="diffchange diffchange-inline"></font></ins></a><br /><font size="-1">Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2; --enable-threads --enable-lfs --enable-pvm; CC=icc CFLAGS=&quot;-O3 -axMKW -static&quot; <br />the RPM spec file is available: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-pvm.spec"><ins class="diffchange diffchange-inline"><font color="#000000">hmmer</ins>-pvm.spec<ins class="diffchange diffchange-inline"></font></ins></a> </font><br /><br /></dd><dt><strong>Intel OpenBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-openbsd.tar.gz<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2.bin.intel-openbsd.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; OpenBSD 3.2; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel Solaris</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-solaris.tar.gz"><ins class="diffchange diffchange-inline"><font color="#000000">hmmer</ins>-2.3.2.bin.intel-solaris.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; x86 Solaris 9; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a> <br /><font size="-1">Silicon Graphics Altix 3000; 16xItanium2/900/1.5; Linux 2.4.19; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics MIPS IRIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.sgi-irix64.tar.gz"><ins class="diffchange diffchange-inline"><font color="#000000">hmmer</ins>-2.3.2.bin.sgi-irix64.tar.gz<ins class="diffchange diffchange-inline"></font></ins></a> <br /><font size="-1">Silicon Graphics Origin200; 4xMIPS R10K/180,195/2; IRIX 6.5.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Sun Sparc Solaris</strong> </dt><dd>[The Solaris box in our compile farm has recently decided to quit, after years of faithful service. For now, build from the <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz<ins class="diffchange diffchange-inline">"><font color="#000000</ins>">source release<ins class="diffchange diffchange-inline"></font></ins></a> instead. We have one report that 2.3.2 does not compile cleanly on Solaris 8: you may need to manually add -lnsl to LIBS in src/Makefile, after running ./configure. We will resolve this in a subsequent release, as soon as we have access to Solaris again.]&nbsp;<br /><strong><font size="3">=============================================================================</font></strong><br /></dd></font></div></td></tr>
</table>
Ksjung
http://Opengenome.net/index.php?title=HMMer&diff=10936&oldid=prev
Ksjung at 12:01, 7 June 2006
2006-06-07T12:01:21Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 12:01, 7 June 2006</td>
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<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><font color="#800080" size="4"><strong>HMMer </strong></font>&rarr; <font color="#ff00ff" size="2">Hidden Markov Model package from Sean Eddy</font><br /><br />HMMer은 hidden markov models을 적용한 수학적인 방법을 기초로하여 개발된것으로,&nbsp;<br />모든 염기 서열을 인지한 후 multiple alignment를 통해 비교 가능한 염기 서열을 찾아낸다.&nbsp;<br /><br /><br /><font size="2"><font color="#99cc00" size="3"><strong>관련문서</strong></font> : <a href="http://hmmer.wustl.edu/#overview">http://hmmer.wustl.edu/#overview</a><br /><font color="#99cc00" size="3"><strong>=============================================================================<br />Download</strong></font> : <a href="http://hmmer.wustl.edu/#download">http://hmmer.wustl.edu/#download</a><br /><dt><strong><br />Source code version</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz">hmmer-2.3.2.tar.gz</a> <br /><br /></dd><dt><strong>AMD Opteron/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz">hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz</a><br /><font size="-1">Opteron 242, 2x1.6 GHz; SUSE Linux; GCC 3.3.3; --enable-threads --enable-lfs <br />[Contributed by Martin Gollery, University of Nevada, Reno.]<br />RPMs built with the <a href="http://www.pgroup.com/">Portland Group</a> C compiler are also available from Joe Landman and <a href="http://www.scalableinformatics.com/">Scalable Informatics, LLC</a>:<br />you can download <a href="http://downloads.scalableinformatics.com/downloads/hmmer/hmmer-2.3.2-5pgi.x86_64_pgi.rpm">hmmer-2.3.2-5pgi.x86_64_pgi.rpm</a> from their site. </font><br /><br /></dd><dt><strong>Apple Macintosh PowerPC OS/X</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz">hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz</a> <br /><font size="-1">Apple PowerPC; 2x G4/1.25Ghz; OS/X Darwin 6.8; --enable-threads --enable-lfs --enable-altivec; CFLAGS=&quot;-O&quot; <br />Includes Altivec optimizations contributed by Erik Lindahl, Stanford University. </font><br /><br /></dd><dt><strong>Compaq Alpha Tru64</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-tru64.tar.gz">hmmer-2.3.2.bin.alpha-tru64.tar.gz</a><br /><font size="-1">Compaq Alpha ES40; Tru64 5.1B; --enable-threads --enable-lfs; CC=cc CFLAGS=-O </font><br /><br /></dd><dt><strong>Compaq Alpha Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-linux.tar.gz">hmmer-2.3.2.bin.alpha-linux.tar.gz</a><br /><font size="-1">Compaq Alpha ES40; Red Hat Alpha Linux 7.1; --enable-threads --enable-lfs; CFLAGS=-O </font></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><font color="#800080" size="4"><strong>HMMer </strong></font>&rarr; <font color="#ff00ff" size="2">Hidden Markov Model package from Sean Eddy</font><br /><br />HMMer은 hidden markov models을 적용한 수학적인 방법을 기초로하여 개발된것으로,&nbsp;<br />모든 염기 서열을 인지한 후 multiple alignment를 통해 비교 가능한 염기 서열을 찾아낸다.&nbsp;<br /><br /><br /><font size="2"><font color="#99cc00" size="3"><strong>관련문서</strong></font> : <a href="http://hmmer.wustl.edu/#overview">http://hmmer.wustl.edu/#overview</a<ins class="diffchange diffchange-inline">><br /><br /</ins>><br /><font color="#99cc00" size="3"><strong>=============================================================================<br />Download</strong></font> : <a href="http://hmmer.wustl.edu/#download">http://hmmer.wustl.edu/#download</a><br /><dt><strong><br />Source code version</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz">hmmer-2.3.2.tar.gz</a> <br /><br /></dd><dt><strong>AMD Opteron/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz">hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz</a><br /><font size="-1">Opteron 242, 2x1.6 GHz; SUSE Linux; GCC 3.3.3; --enable-threads --enable-lfs <br />[Contributed by Martin Gollery, University of Nevada, Reno.]<br />RPMs built with the <a href="http://www.pgroup.com/">Portland Group</a> C compiler are also available from Joe Landman and <a href="http://www.scalableinformatics.com/">Scalable Informatics, LLC</a>:<br />you can download <a href="http://downloads.scalableinformatics.com/downloads/hmmer/hmmer-2.3.2-5pgi.x86_64_pgi.rpm">hmmer-2.3.2-5pgi.x86_64_pgi.rpm</a> from their site. </font><br /><br /></dd><dt><strong>Apple Macintosh PowerPC OS/X</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz">hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz</a> <br /><font size="-1">Apple PowerPC; 2x G4/1.25Ghz; OS/X Darwin 6.8; --enable-threads --enable-lfs --enable-altivec; CFLAGS=&quot;-O&quot; <br />Includes Altivec optimizations contributed by Erik Lindahl, Stanford University. </font><br /><br /></dd><dt><strong>Compaq Alpha Tru64</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-tru64.tar.gz">hmmer-2.3.2.bin.alpha-tru64.tar.gz</a><br /><font size="-1">Compaq Alpha ES40; Tru64 5.1B; --enable-threads --enable-lfs; CC=cc CFLAGS=-O </font><br /><br /></dd><dt><strong>Compaq Alpha Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-linux.tar.gz">hmmer-2.3.2.bin.alpha-linux.tar.gz</a><br /><font size="-1">Compaq Alpha ES40; Red Hat Alpha Linux 7.1; --enable-threads --enable-lfs; CFLAGS=-O </font></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p><!--        <dt> <strong>Hewlett/Packard PA/RISC, HP/UX</strong> --><!--        <dd> Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.hp-hpux.tar.gz"> --><!--      hmmer-2.3.2.bin.hp-hpux.tar.gz</a> <br> --><!--      <font size=-1> --><!--      <br> --><!--      Does not support large files (>2 GB).  --><!--      </font> --><!--          <br><br> --></p></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p><!--        <dt> <strong>Hewlett/Packard PA/RISC, HP/UX</strong> --><!--        <dd> Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.hp-hpux.tar.gz"> --><!--      hmmer-2.3.2.bin.hp-hpux.tar.gz</a> <br> --><!--      <font size=-1> --><!--      <br> --><!--      Does not support large files (>2 GB).  --><!--      </font> --><!--          <br><br> --></p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-linux.tar.gz">hmmer-2.3.2.bin.ia64-hp-linux.tar.gz</a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; Linux 2.4.18-e.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), HP/UX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz">hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz</a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; HP/UX 11.22; --enable-threads --enable-lfs; CC=cc CFLAGS=&quot;-O&quot; </font></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-linux.tar.gz">hmmer-2.3.2.bin.ia64-hp-linux.tar.gz</a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; Linux 2.4.18-e.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), HP/UX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz">hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz</a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; HP/UX 11.22; --enable-threads --enable-lfs; CC=cc CFLAGS=&quot;-O&quot; </font></div></td></tr>
</table>
Ksjung
http://Opengenome.net/index.php?title=HMMer&diff=10935&oldid=prev
Ksjung at 12:01, 7 June 2006
2006-06-07T12:01:11Z
<p></p>
<p><b>New page</b></p><div><font color="#800080" size="4"><strong>HMMer </strong></font>&rarr; <font color="#ff00ff" size="2">Hidden Markov Model package from Sean Eddy</font><br /><br />HMMer은 hidden markov models을 적용한 수학적인 방법을 기초로하여 개발된것으로,&nbsp;<br />모든 염기 서열을 인지한 후 multiple alignment를 통해 비교 가능한 염기 서열을 찾아낸다.&nbsp;<br /><br /><br /><font size="2"><font color="#99cc00" size="3"><strong>관련문서</strong></font> : <a href="http://hmmer.wustl.edu/#overview">http://hmmer.wustl.edu/#overview</a><br /><font color="#99cc00" size="3"><strong>=============================================================================<br />Download</strong></font> : <a href="http://hmmer.wustl.edu/#download">http://hmmer.wustl.edu/#download</a><br /><dt><strong><br />Source code version</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz">hmmer-2.3.2.tar.gz</a> <br /><br /></dd><dt><strong>AMD Opteron/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz">hmmer-2.3.2.bin.amd-opteron-64-suse-linux.tar.gz</a><br /><font size="-1">Opteron 242, 2x1.6 GHz; SUSE Linux; GCC 3.3.3; --enable-threads --enable-lfs <br />[Contributed by Martin Gollery, University of Nevada, Reno.]<br />RPMs built with the <a href="http://www.pgroup.com/">Portland Group</a> C compiler are also available from Joe Landman and <a href="http://www.scalableinformatics.com/">Scalable Informatics, LLC</a>:<br />you can download <a href="http://downloads.scalableinformatics.com/downloads/hmmer/hmmer-2.3.2-5pgi.x86_64_pgi.rpm">hmmer-2.3.2-5pgi.x86_64_pgi.rpm</a> from their site. </font><br /><br /></dd><dt><strong>Apple Macintosh PowerPC OS/X</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz">hmmer-2.3.2.bin.powerpc-apple-osx.tar.gz</a> <br /><font size="-1">Apple PowerPC; 2x G4/1.25Ghz; OS/X Darwin 6.8; --enable-threads --enable-lfs --enable-altivec; CFLAGS=&quot;-O&quot; <br />Includes Altivec optimizations contributed by Erik Lindahl, Stanford University. </font><br /><br /></dd><dt><strong>Compaq Alpha Tru64</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-tru64.tar.gz">hmmer-2.3.2.bin.alpha-tru64.tar.gz</a><br /><font size="-1">Compaq Alpha ES40; Tru64 5.1B; --enable-threads --enable-lfs; CC=cc CFLAGS=-O </font><br /><br /></dd><dt><strong>Compaq Alpha Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.alpha-linux.tar.gz">hmmer-2.3.2.bin.alpha-linux.tar.gz</a><br /><font size="-1">Compaq Alpha ES40; Red Hat Alpha Linux 7.1; --enable-threads --enable-lfs; CFLAGS=-O </font><br />
<p><!-- <dt> <strong>Hewlett/Packard PA/RISC, HP/UX</strong> --><!-- <dd> Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.hp-hpux.tar.gz"> --><!-- hmmer-2.3.2.bin.hp-hpux.tar.gz</a> <br> --><!-- <font size=-1> --><!-- <br> --><!-- Does not support large files (>2 GB). --><!-- </font> --><!-- <br><br> --></p><br />
</dd><dt><strong>Hewlett/Packard IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-linux.tar.gz">hmmer-2.3.2.bin.ia64-hp-linux.tar.gz</a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; Linux 2.4.18-e.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Hewlett/Packard IA64 (Itanium2), HP/UX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz">hmmer-2.3.2.bin.ia64-hp-hpux.tar.gz</a> <br /><font size="-1">HP rx2600; 2xItanium2/900/1.5; HP/UX 11.22; --enable-threads --enable-lfs; CC=cc CFLAGS=&quot;-O&quot; </font><br />
<p>&nbsp;</p><br />
</dd><dt><strong>IBM Power4, Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz">hmmer-2.3.2.bin.ibm-pwr4-suse-linux.tar.gz</a> <br /><font size="-1">IBM pSeries; Power4; SusE Linux 8 (SLES8); --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O -q64 -qtune=pwr4 -qcache=auto&quot;<br />[Provided by Bob Arenburg and IBM Life Sciences.] </font><br />
<p>&nbsp;</p><br />
</dd><dt><strong>IBM Power4, AIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ibm-aix.tar.gz">hmmer-2.3.2.bin.ibm-aix.tar.gz</a> <br /><font size="-1">IBM pSeries 630; 4xPower4/1.2GHz; AIX 5.2; --enable-threads --enable-lfs; CC=xlc_r CFLAGS=&quot;-O2&quot;<br />On large multiprocessor systems (8 cpus or more), you want to add &quot;-bmaxdata:0x80000000&quot; to CFLAGS and recompile to enable AIX's &quot;Large Program Support&quot;; otherwise, AIX only allows a program to allocate 256 MB of RAM by default. </font><br /><br /></dd><dt><strong>Intel FreeBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-freebsd.tar.gz">hmmer-2.3.2.bin.intel-freebsd.tar.gz</a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; FreeBSD 4.7; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel GNU/Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-linux.tar.gz">hmmer-2.3.2.bin.intel-linux.tar.gz</a> <br />Or, as an RPM: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2-1static_pvm.i686.rpm">hmmer-2.3.2-1static_pvm.i686.rpm</a><br /><font size="-1">Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2; --enable-threads --enable-lfs --enable-pvm; CC=icc CFLAGS=&quot;-O3 -axMKW -static&quot; <br />the RPM spec file is available: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-pvm.spec">hmmer-pvm.spec</a> </font><br /><br /></dd><dt><strong>Intel OpenBSD</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-openbsd.tar.gz">hmmer-2.3.2.bin.intel-openbsd.tar.gz</a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; OpenBSD 3.2; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Intel Solaris</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.intel-solaris.tar.gz">hmmer-2.3.2.bin.intel-solaris.tar.gz</a> <br /><font size="-1">Dell 1550/VMWare; 2xPIII/1.27/512K; x86 Solaris 9; --enable-threads --enable-lfs; CFLAGS=&quot;-O2&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics IA64 (Itanium2), Linux</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz">hmmer-2.3.2.bin.ia64-sgi-linux.tar.gz</a> <br /><font size="-1">Silicon Graphics Altix 3000; 16xItanium2/900/1.5; Linux 2.4.19; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Silicon Graphics MIPS IRIX</strong> </dt><dd>Download: <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.bin.sgi-irix64.tar.gz">hmmer-2.3.2.bin.sgi-irix64.tar.gz</a> <br /><font size="-1">Silicon Graphics Origin200; 4xMIPS R10K/180,195/2; IRIX 6.5.12; --enable-threads --enable-lfs; CFLAGS=&quot;-O2 -static&quot; </font><br /><br /></dd><dt><strong>Sun Sparc Solaris</strong> </dt><dd>[The Solaris box in our compile farm has recently decided to quit, after years of faithful service. For now, build from the <a href="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz">source release</a> instead. We have one report that 2.3.2 does not compile cleanly on Solaris 8: you may need to manually add -lnsl to LIBS in src/Makefile, after running ./configure. We will resolve this in a subsequent release, as soon as we have access to Solaris again.]&nbsp;<br /><strong><font color="#99cc00" size="3">=============================================================================</font></strong><br /></dd></font></div>
Ksjung