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DALI - Revision history
2026-05-12T20:59:42Z
Revision history for this page on the wiki
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http://Opengenome.net/index.php?title=DALI&diff=11823&oldid=prev
Ksjung at 05:09, 17 August 2006
2006-08-17T05:09:47Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 05:09, 17 August 2006</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p><font color="#800080" size="4">DALI</font></p></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p><font color="#800080" size="4">DALI</font></p></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><p>DALI는 3D 구조를 적절히 [[정렬]]하는 [[algorithm]]으로 distance matrix를 계산하여 작은 규모의 contact pattern으로 분리하여, 유사한 contact pattern들이&nbsp;<br />align 하도록 Monte Carlo method로서 최적화 한다. DALI는 3D 구조를 PDB format으로 입력하면 수록된 database와 비교하여 구조적으로 유사한&nbsp;<br />단백질을 찾아서 보여준다. 또한 [[FSSP]] (Fold classification based on Structure-Structure alignment of Proteins)를 통하여 3D 구조를 중첩된 image와&nbsp;<br />같은 family의 [[<del class="diffchange diffchange-inline">mulialignmnet</del>]]도 제공하고 있다.<br /><a href="http://www.ebi.ac.uk/dali/dali_web.gif">http://www.ebi.ac.uk/dali/dali_web.gif</a></p></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><p>DALI는 3D 구조를 적절히 [[정렬]]하는 [[algorithm]]으로 distance matrix를 계산하여 작은 규모의 contact pattern으로 분리하여, 유사한 contact pattern들이&nbsp;<br />align 하도록 Monte Carlo method로서 최적화 한다. DALI는 3D 구조를 PDB format으로 입력하면 수록된 database와 비교하여 구조적으로 유사한&nbsp;<br />단백질을 찾아서 보여준다. 또한 [[FSSP]] (Fold classification based on Structure-Structure alignment of Proteins)를 통하여 3D 구조를 중첩된 image와&nbsp;<br />같은 family의 [[<ins class="diffchange diffchange-inline">multialignmnet</ins>]]도 제공하고 있다.<br /><a href="http://www.ebi.ac.uk/dali/dali_web.gif">http://www.ebi.ac.uk/dali/dali_web.gif</a></p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p><font color="#99cc00" size="3"><strong># Site</strong></font><br /><a href="http://www.ebi.ac.uk/dali/">http://www.ebi.ac.uk/dali/</a><br /><a href="http://www.ebi.ac.uk/Information/images/dali_small.gif">http://www.ebi.ac.uk/Information/images/dali_small.gif</a></p></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p><font color="#99cc00" size="3"><strong># Site</strong></font><br /><a href="http://www.ebi.ac.uk/dali/">http://www.ebi.ac.uk/dali/</a><br /><a href="http://www.ebi.ac.uk/Information/images/dali_small.gif">http://www.ebi.ac.uk/Information/images/dali_small.gif</a></p></div></td></tr>
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Ksjung
http://Opengenome.net/index.php?title=DALI&diff=11822&oldid=prev
Ksjung at 05:09, 17 August 2006
2006-08-17T05:09:26Z
<p></p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 05:09, 17 August 2006</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td>
<td colspan="2" class="diff-lineno">Line 1:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p><font color="#800080" size="4">DALI</font></p></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p><font color="#800080" size="4">DALI</font></p></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><p>DALI는 3D 구조를 적절히 [[정렬]]하는 [[algorithm]]으로 distance matrix를 계산하여 작은 규모의 contact pattern으로 분리하여, 유사한 contact pattern들이&nbsp;<br />align 하도록 Monte Carlo method로서 최적화 한다. DALI는 3D 구조를 PDB format으로 입력하면 수록된 database와 비교하여 구조적으로 유사한&nbsp;<br />단백질을 찾아서 보여준다. 또한 [[FSSP]] (Fold classification based on Structure-Structure alignment of Proteins)를 통하여 3D 구조를 중첩된 image와&nbsp;<br />같은 family의 [[<del class="diffchange diffchange-inline">muliplealignmnet</del>]]도 제공하고 있다.<br /><a href="http://www.ebi.ac.uk/dali/dali_web.gif">http://www.ebi.ac.uk/dali/dali_web.gif</a></p></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><p>DALI는 3D 구조를 적절히 [[정렬]]하는 [[algorithm]]으로 distance matrix를 계산하여 작은 규모의 contact pattern으로 분리하여, 유사한 contact pattern들이&nbsp;<br />align 하도록 Monte Carlo method로서 최적화 한다. DALI는 3D 구조를 PDB format으로 입력하면 수록된 database와 비교하여 구조적으로 유사한&nbsp;<br />단백질을 찾아서 보여준다. 또한 [[FSSP]] (Fold classification based on Structure-Structure alignment of Proteins)를 통하여 3D 구조를 중첩된 image와&nbsp;<br />같은 family의 [[<ins class="diffchange diffchange-inline">mulialignmnet</ins>]]도 제공하고 있다.<br /><a href="http://www.ebi.ac.uk/dali/dali_web.gif">http://www.ebi.ac.uk/dali/dali_web.gif</a></p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p><font color="#99cc00" size="3"><strong># Site</strong></font><br /><a href="http://www.ebi.ac.uk/dali/">http://www.ebi.ac.uk/dali/</a><br /><a href="http://www.ebi.ac.uk/Information/images/dali_small.gif">http://www.ebi.ac.uk/Information/images/dali_small.gif</a></p></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><p><font color="#99cc00" size="3"><strong># Site</strong></font><br /><a href="http://www.ebi.ac.uk/dali/">http://www.ebi.ac.uk/dali/</a><br /><a href="http://www.ebi.ac.uk/Information/images/dali_small.gif">http://www.ebi.ac.uk/Information/images/dali_small.gif</a></p></div></td></tr>
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Ksjung
http://Opengenome.net/index.php?title=DALI&diff=11821&oldid=prev
Ksjung at 05:07, 17 August 2006
2006-08-17T05:07:30Z
<p></p>
<p><b>New page</b></p><div><p><font color="#800080" size="4">DALI</font></p><br />
<p>DALI는 3D 구조를 적절히 [[정렬]]하는 [[algorithm]]으로 distance matrix를 계산하여 작은 규모의 contact pattern으로 분리하여, 유사한 contact pattern들이&nbsp;<br />align 하도록 Monte Carlo method로서 최적화 한다. DALI는 3D 구조를 PDB format으로 입력하면 수록된 database와 비교하여 구조적으로 유사한&nbsp;<br />단백질을 찾아서 보여준다. 또한 [[FSSP]] (Fold classification based on Structure-Structure alignment of Proteins)를 통하여 3D 구조를 중첩된 image와&nbsp;<br />같은 family의 [[muliplealignmnet]]도 제공하고 있다.<br /><a href="http://www.ebi.ac.uk/dali/dali_web.gif">http://www.ebi.ac.uk/dali/dali_web.gif</a></p><br />
<p><font color="#99cc00" size="3"><strong># Site</strong></font><br /><a href="http://www.ebi.ac.uk/dali/">http://www.ebi.ac.uk/dali/</a><br /><a href="http://www.ebi.ac.uk/Information/images/dali_small.gif">http://www.ebi.ac.uk/Information/images/dali_small.gif</a></p></div>
Ksjung