Linguamatics at 15:35, 16 November 2010

2010-11-16T15:35:36Z

WikiSysop at 11:53, 8 November 2008

2008-11-08T11:53:58Z

New page

[[L-Breeder]]: Allows you to display and breed L-system forms 
[[act]]: A DNA sequence comparison viewer based on Artemis 
[[ariadne]]: Programs to compare protein sequences and profiles 
[[artemis]]: A DNA sequence viewer and annotation tool 
[[avida]]: Avida is an auto-adaptive genetic system designed for ALife research 
[[babel]]: Converts among various molecular file formats 
[[biojava]]: Open-source java tools for processing biological data 
[[bioperl]]: openfree Biological perl module. 
[[chemeq]]: Outputs LaTeX code for chemical reaction 
[[clustalw]]: CLUSTAL W Multiple Sequence Alignment Program 
[[mrbayes]]: Bayesian inference of phylogeny 
[[coalesce]]: A program to fit population models 
[[crimap]]: Creation of multilocus linkage maps 
[[deft]]: Density functional molecular orbital calculation 
[[distribfold]]: distributedfolding.org distributed protein folding project 
[[dna-qc]]: A quality control algorithm for DNA sequencing projects 
[[emboss]]: A collection of open source tools for genetic sequence analysis 
[[fasta]]: A collection of programs for searching DNA and protein databases 
[[fasta3]]: A collection of programs for searching DNA and protein databases 
[[fastdnaml]]: Faster DNAML, makes phylogenetic trees using maximum likelihood 
[[flip]]: Flip is used to find/translate orfs 
[[fluctuate]]: A program to fit population models 
[[garlic]]: Molecular viewer, editor and visualization program 
[[genpak]]: A set of small utilities to manipulate DNA sequences 
[[gff2ps]]: Converts gff-formated genomic data-sets to PostScript 
[[gperiodic]]: Displays a periodic table of the elements 
[[grappa]]: Genome Rearrangements Analysis and Phylogeny Software 
[[hmmer]]: Profile hidden Markov models for biological sequence analysis 
[[kinemage]]: A molecular visualization program with special functions 
[[lamarc]]: A package of programs for computing population parameters 
[[linux-foldingathome]]: Distributed client for Protein Folding 
[[libgenome]]: Toolkit for developing bioinformatic related software in C++ 
[[lsysexp]]: A GTK based program for viewing and creating L-system fractals 
[[migrate]]: A program to estimate population sizes and migration rates 
[[molden]]: Display molecular orbitals and electron densities in 2D and 3D 
[[mopac]]: Semi-empirical (MNDO, etc.) molecular orbital calculation 
[[nab]]: A language for macromolecules 
[[ncbi-toolkit]]: NCBI development toolkit, including BLAST 2 and GenBank/Entrez support 
[[nclever]]: NClever is a character-based version of NCBI's Entrez program 
[[ortep3]]: The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure 
[[p5-AcePerl]]: Perl5 interface to the ACEDB genome database system 
[[p5-bioperl]]: A collection of Perl modules for bioinformatics 
[[paml]]: Phylogenetic Analysis by Maximum Likelihood (PAML) 
[[phylip]]: A Phylogeny Inference Package 
[[platon]]: Tool for viewing molecular/crystallographic structures 
[[povchem]]: Simple yet powerful tool to generate POV from a PDB file 
[[primer3]]: Primer3 helps to choose primers for PCR reactions 
[[psi88]]: Plotting wavefunctions (molecular orbitals) in 3D 
[[py-biopython]]: A collection of Python modules for bioinformatics 
[[pymol]]: Free and Open-Source molecular modeling system 
[[rasmol]]: Fast Molecular Visualization Program 
[[recombine]]: A program to fit population models across sites 
[[ruby-bio]]: Integrated environment for Bioinformatics written in Ruby 
[[seaview]]: Multiple DNA/protein sequence alignment editor 
[[seqio]]: A set of C functions which can read/write biological sequence files 
[[sim4]]: An algorithm for aligning expressed DNA with genomic sequences 
[[spdbv]]: Deep View Swiss-PdbViewer is a Protein viewer and analysis tool 
[[tRNAscan-SE]]: An improved tool for transfer RNA detection 
[[t_coffee]]: A multiple DNA or protein sequence alignment package 
[[tinker]]: A general purpose molecular modelling package 
[[treepuzzle]]: Maximum likelihood phylogeny reconstruction using quartets 
[[treeviewx]]: A phylogenetic tree viewer 
[[wise]]: Intelligent algorithms for DNA searches 
[[xdrawchem]]: Chemical drawing program 
[[xmolwt]]: Calculate formula weight and percent of each element for a given formula 
[[blast]]: WU BLAST, a software package for sequence similarity searches 
[[embassy]]: A collection of contributed EMBOSS applications 
[[p5-Bio-ASN1-EntrezGene]]: Regular expression-based Perl Parser for NCBI Entrez Gene 
[[p5-Bio-Das]]: Client-side library for Distributed Genome Annotation System 
[[adun]]: Molecular Simulator for GNUstep 
[[belvu]]: A viewer for multiple sequence alignments 
[[biococoa]]: Bioinformatics framework 
[[blat]]: A fast tool for local sequence similarity searches 
[[boinc-simap]]: Similarity Matrix of Proteins project for BOINC 
[[dotter]]: A viewer for multiple sequence alignments 
[[gmap]]: A Genomic Mapping and Alignment Program for mRNA and EST Sequences 
[[jalview]]: A viewer and editor for multiple sequence alignments 
[[lagan]]: Efficient tools for large-scale multiple alignments of genomic DNA 
[[mafft]]: Multiple sequence alignments based on fast Fourier transform 
[[p5-Bio-Phylo]]: Phylogenetic analysis using perl 
[[p5-bioperl-devel]]: A collection of Perl modules for bioinformatics (developer release) 
[[p5-bioperl-run]]: Wrapper modules for common bioinformatics tools 
[[p5-bioperl-run-devel]]: Wrapper modules for common bioinformatics tools (developer release) 
[[protomol]]: OO, component based, framework for molecular dynamics (MD) simulations 
[[mummer]]: A modular system for rapid whole genome alignment

@@ Line 1: / Line 1: @@
-[[L-Breeder]]: Allows you to display and breed L-system forms <br />
+<p>[[L-Breeder]]: Allows you to display and breed L-system forms <br />
 [[act]]: A DNA sequence comparison viewer based on Artemis <br />
 [[ariadne]]: Programs to compare protein sequences and profiles <br />
@@ Line 28: / Line 28: @@
 [[hmmer]]: Profile hidden Markov models for biological sequence analysis <br />
 [[kinemage]]: A molecular visualization program with special functions <br />
-[[lamarc]]: A package of programs for computing population parameters <br />
+[[lamarc]]: A package of programs for computing population parameters<br />
 [[linux-foldingathome]]: Distributed client for Protein Folding <br />
 [[libgenome]]: Toolkit for developing bioinformatic related software in C++ <br />
@@ Line 84: / Line 85: @@
 [[protomol]]: OO, component based, framework for molecular dynamics (MD) simulations <br />
 [[mummer]]: A modular system for rapid whole genome alignment <br />

Bioinformatics software full list - Revision history

Linguamatics at 15:35, 16 November 2010

WikiSysop at 11:53, 8 November 2008